View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2062_low_18 (Length: 293)

Name: NF2062_low_18
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2062_low_18
NF2062_low_18
[»] chr6 (16 HSPs)
chr6 (95-271)||(2986761-2986937)
chr6 (99-256)||(2952983-2953140)
chr6 (95-263)||(2928127-2928295)
chr6 (126-271)||(2935663-2935808)
chr6 (1-93)||(3002848-3002952)
chr6 (1-53)||(2954975-2955027)
chr6 (154-203)||(2955324-2955373)
chr6 (1-53)||(2952843-2952895)
chr6 (99-171)||(2955220-2955292)
chr6 (1-53)||(2974892-2974944)
chr6 (1-53)||(2986620-2986672)
chr6 (12-53)||(2935508-2935549)
chr6 (92-137)||(3002775-3002820)
chr6 (159-261)||(2985775-2985878)
chr6 (14-51)||(2983761-2983798)
chr6 (1-49)||(2965409-2965457)
[»] scaffold0024 (3 HSPs)
scaffold0024 (92-271)||(43222-43401)
scaffold0024 (99-200)||(33991-34092)
scaffold0024 (1-53)||(34180-34232)
[»] chr7 (2 HSPs)
chr7 (125-271)||(3340056-3340203)
chr7 (12-53)||(3339900-3339941)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 2986761 - 2986937
Alignment:
Q  95 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 194  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||    
T  2986761 tgagtttaatgtaacatgatttatgttttgataccttaattgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttga 2986860  T
Q  195 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttg 271  Q
     |||||||| |   || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2986861 atgtgaattgacgaaatttagtttatataattgaaaaagaagaggaacatcgataaaataagagagtgcaacacttg 2986937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 2952983 - 2953140
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 198  Q
    ||||||||| | ||||||||| ||  ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || ||    
T  2952983 tttaatgtatcatgatttatgtttggatatcttgattgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagt 2953082  T
Q  199 gaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataag 256  Q
    ||||| ||  ||| |||||| ||||||| |||||||||||||||||| | ||||||||    
T  2953083 gaatttatcaaaactagtttgaatgattaaaaaagaagaggaacatccataaaataag 2953140  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 263
Target Start/End: Original strand, 2928127 - 2928295
Alignment:
Q  95 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 194  Q
    |||||||||  ||| |||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  2928127 tgagtttaagttaaggtgacttatgttttgataccttgattgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttga 2928226  T
Q  195 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgc 263  Q
    ||||||||| |   ||| | |||| ||||||| |||||||||||| || |  | |||||||||||||||    
T  2928227 gtgtgaatttaccaaaactggtttgaatgattaaaaaagaagaggcacgttaataaaataagagagtgc 2928295  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 2935663 - 2935808
Alignment:
Q  126 taccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgat 225  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||| |||||||| ||  |||   |||| ||||||    
T  2935663 taccttgattgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatttatcaaaacgcgtttgaatgat 2935762  T
Q  226 tgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttg 271  Q
    | ||||||||||||||| || | ||||||||| | || ||||||||    
T  2935763 taaaaaagaagaggaacgtcaataaaataagacaatgaaacacttg 2935808  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3002952 - 3002848
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaat------------gtgtgtttggttccacggtgataataattgtttttga 88  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||            ||| |||||||||||||||||||| ||||||||||||    
T  3002952 gatagtgtggttggcaaaatctaggggtgcaggtagaaacttcaaactaatgtcgtgtctcgcgtgcgtttggttccacggtgataacaattgtttttga 3002853  T
Q  89 atgaa 93  Q
    |||||    
T  3002852 atgaa 3002848  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2954975 - 2955027
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  2954975 gatagtgtggttggcaaaatctagggttgcaggtagaaactcctaactaatgt 2955027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 2955324 - 2955373
Alignment:
Q  154 attcaagttgtttggataatttagatccaaattacttttgagtgtgaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  2955324 attcaagttgtttggataatttagatcaaaattacttctgaatgtgaatt 2955373  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2952843 - 2952895
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||| | |||||||||||||||||||||||||||| ||| |||||||||    
T  2952843 gatagtgttgttggcaaaatctaggggtgcaggtagaaattcctaactaatgt 2952895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 2955220 - 2955292
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggata 171  Q
    ||||||||||| | ||||||| |   |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  2955220 tttaatgtaacataatttatgttaggataccttaattgaaaagtgatttttcataattcaagtgttttggata 2955292  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2974892 - 2974944
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||| | ||| |||||||||||||||||||||||||||| |||||||||    
T  2974892 gatagtgttgttggaaaaatctaggggtgcaggtagaaactcctaactaatgt 2974944  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2986620 - 2986672
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  2986620 gatagtgtggttggcaaaatctaggggtgcaactagaaactcctaactaatgt 2986672  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 2935508 - 2935549
Alignment:
Q  12 tggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  2935508 tggcaaaatctaggggtgcaggtagaaactcataactaatgt 2935549  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 3002820 - 3002775
Alignment:
Q  92 aaatgagtttaatgtaacgtgatttatgatttaataccttaattga 137  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  3002820 aaatgagtttagtgtaacatgatttatgttttaataccttaattga 3002775  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 2985775 - 2985878
Alignment:
Q  159 agttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgattgaaaa-agaagaggaacatcgacaaaataaga 257  Q
    |||||||||| ||||||| ||| |||||||| ||||||||| ||| |   ||| |||||| ||||||| |||| ||||||||| |||| |  ||||||||    
T  2985775 agttgtttgggtaatttaaatcgaaattactcttgagtgtgcatttaccaaaactagtttgaatgattaaaaaaagaagaggagcatcaatcaaataaga 2985874  T
Q  258 gagt 261  Q
    ||||    
T  2985875 gagt 2985878  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 2983761 - 2983798
Alignment:
Q  14 gcaaaatctaggggtgcaggtagaaactccaaactaat 51  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  2983761 gcaaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2965409 - 2965457
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaacta 49  Q
    |||||||| | ||||||||||||||| | |||||||||||||| |||||    
T  2965409 gatagtgttgttggcaaaatctagggtttcaggtagaaactcctaacta 2965457  T

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Target: scaffold0024 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 271
Target Start/End: Complemental strand, 43401 - 43222
Alignment:
Q  92 aaatgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttt 191  Q
    |||||| |||||| |||  ||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  43401 aaatgactttaatataatatgatttatgtttgaatatcttgattgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttt 43302  T
Q  192 tgagtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttg 271  Q
    | |||||||||| ||  ||| |||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  43301 taagtgtgaatttatcaaaactagtttgaatgattgaaaaagaagaggaacatcaataaaataagagactgcaacacttg 43222  T

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Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 34092 - 33991
Alignment:
Q  99 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 198  Q
    ||||||||||| ||||||||  ||  ||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  34092 tttaatgtaacatgatttatatttggatagcttgattgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgt 33993  T
Q  199 ga 200  Q
    ||    
T  33992 ga 33991  T

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Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34232 - 34180
Alignment:
Q  1 gatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||| | |||||||||||| ||||||| ||||||||||| || ||||||    
T  34232 gatagtgttgttggcaaaatctacgggtgcaagtagaaactcctaagtaatgt 34180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 3340056 - 3340203
Alignment:
Q  125 ataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatga 224  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||  ||| | |||| |||||    
T  3340056 ataccttgattgaaaagtaaattttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatttatcaaaactggttttaatga 3340155  T
Q  225 tt-gaaaaagaagaggaacatcgacaaaataagagagtgcaacacttg 271  Q
    ||  |||||||| |||||| || | |||||||||||||||||||||||    
T  3340156 ttaaaaaaagaaaaggaacgtcaataaaataagagagtgcaacacttg 3340203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3339900 - 3339941
Alignment:
Q  12 tggcaaaatctaggggtgcaggtagaaactccaaactaatgt 53  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  3339900 tggcaaaatctaggggtgcatgtagaaactcctaactaatgt 3339941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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