View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2062_low_4 (Length: 496)

Name: NF2062_low_4
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2062_low_4
NF2062_low_4
[»] chr6 (3 HSPs)
chr6 (18-325)||(17986654-17986958)
chr6 (324-422)||(747214-747312)
chr6 (329-389)||(2970313-2970373)
[»] chr5 (1 HSPs)
chr5 (329-490)||(17020671-17020833)
[»] chr7 (2 HSPs)
chr7 (329-373)||(49169296-49169340)
chr7 (391-441)||(43354314-43354364)
[»] chr4 (2 HSPs)
chr4 (334-394)||(46546575-46546635)
chr4 (395-436)||(46546653-46546694)
[»] chr1 (1 HSPs)
chr1 (334-422)||(30962141-30962229)
[»] chr3 (3 HSPs)
chr3 (386-436)||(51298289-51298339)
chr3 (324-386)||(16047069-16047129)
chr3 (325-373)||(30129150-30129198)
[»] chr8 (1 HSPs)
chr8 (213-291)||(35253665-35253745)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 17986958 - 17986654
Alignment:
Q  18 ccactccatggctagagtagtgcgtgagttcagctagggttttatgtttcgaagttttgttttgaaacaaaggaatattatatttataggtttctattgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17986958 ccactccatggctagagtagtgcgtgagttcagctagggttttatgtttcgaagttttgttttgaaacaaaggaatattatatttataggtttctattgt 17986859  T
Q  118 cgcttagtcagaaacctaattcaaggtatcaaccaatattatccagatttgagttaaatcttaccgagttctgaataatannnnnnnnnnnnnnnaagaa 217  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||                |||||    
T  17986858 cgctgagtcagaaacctaattcaaggtatcaaccgatattatccagatttgagttaactcttaccgaattctgaataat---tttttttttttttaagaa 17986762  T
Q  218 atcaaaatcatataaataaccaaaggaatcctcccaacacaagatgtattagagaataaagtcaaaatttacaacagtagttcaacaacaaaaaccatga 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17986761 atcaaaatcaaataaataaccaaaggaatcctcccaacacaagatgtattagagaataaagtcaaaatttacaacagtagttcaacagcaaaaaccatga 17986662  T
Q  318 attatcaa 325  Q
    ||||||||    
T  17986661 attatcaa 17986654  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 422
Target Start/End: Original strand, 747214 - 747312
Alignment:
Q  324 aagaataaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaaca 422  Q
    ||||||||  ||||||| ||||||| ||||||| ||||| | |||||||| ||  |||||||||||||||||||||||||||||| ||||||| |||||    
T  747214 aagaataattatacatggacaccctctttccttataccatccatacacactccttatgtggcatttatttattttattaattaaagaagaaaatcaaca 747312  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 2970373 - 2970313
Alignment:
Q  329 taaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcattt 389  Q
    |||||||||||||||| ||||||||   | |||||  ||||||||||||||||||||||||    
T  2970373 taaagatacatgtacatcctttttctccggaccactcatacacacaccccatgtggcattt 2970313  T

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Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 329 - 490
Target Start/End: Complemental strand, 17020833 - 17020671
Alignment:
Q  329 taaagatacatgtacaccctttttc-cttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaacatatca 427  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  17020833 taaagatacatgtacaccctttttttcttgtaccacccatacacacaccacatgtggcatttatttattttattaattaaaaaagaaaaacaacacaaca 17020734  T
Q  428 ttctctctcctctcacagagnnnnnnnncattctctctgcctctgcaaaggtggccgctctct 490  Q
    ||||||||||||||||| ||        |||||||||| |||||||||| || ||||||||||    
T  17020733 ttctctctcctctcacaaagaaaaaaaacattctctcttcctctgcaaatgtagccgctctct 17020671  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 49169340 - 49169296
Alignment:
Q  329 taaagatacatgtacaccctttttccttgtaccacctatacacac 373  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  49169340 taaagatacatgtacaccctttttccttgtaccactcatacacac 49169296  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 43354364 - 43354314
Alignment:
Q  391 tttattttattaattaaaaaagaaaaacaacatatcattctctctcctctc 441  Q
    |||||||||||||||||||||||||| ||||| | |||| ||||| |||||    
T  43354364 tttattttattaattaaaaaagaaaaccaacacaacattttctcttctctc 43354314  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 46546575 - 46546635
Alignment:
Q  334 atacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttattta 394  Q
    ||||||| |||||||||||||||||| |||| ||||||||| |  ||||||||||||||||    
T  46546575 atacatggacaccctttttccttgtagcacccatacacacagcttatgtggcatttattta 46546635  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 46546653 - 46546694
Alignment:
Q  395 ttttattaattaaaaaagaaaaacaacatatcattctctctc 436  Q
    |||||||||||||||||||||| ||||| | |||||||||||    
T  46546653 ttttattaattaaaaaagaaaaccaacacaacattctctctc 46546694  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 30962229 - 30962141
Alignment:
Q  334 atacatgtacaccctttttccttgtaccacctatacacacaccccatgtggcatttatttattttattaattaaaaaagaaaaacaaca 422  Q
    ||||||| ||||| | ||||||| |||||   |||| ||| ||  |||||||||||||||||||||||||||||| ||||||| |||||    
T  30962229 atacatggacaccttctttccttataccattcatactcactccttatgtggcatttatttattttattaattaaagaagaaaatcaaca 30962141  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 436
Target Start/End: Complemental strand, 51298339 - 51298289
Alignment:
Q  386 atttatttattttattaattaaaaaagaaaaacaacatatcattctctctc 436  Q
    ||||||||||||||| || |||||||||||||||||| | |||||||||||    
T  51298339 atttatttattttataaactaaaaaagaaaaacaacacaacattctctctc 51298289  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 16047069 - 16047129
Alignment:
Q  324 aagaataaagatacatgtacaccctttttccttgtaccacctatacacacaccccatgtggca 386  Q
    |||| |||||||||||||||| ||||||||||||||||||  |||||||| |||| |||||||    
T  16047069 aagagtaaagatacatgtaca-cctttttccttgtaccactcatacacac-ccccttgtggca 16047129  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 30129150 - 30129198
Alignment:
Q  325 agaataaagatacatgtacaccctttttccttgtaccacctatacacac 373  Q
    |||||||  ||||||  ||||||||||||||||||||||| ||||||||    
T  30129150 agaataattatacataaacaccctttttccttgtaccacccatacacac 30129198  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 35253745 - 35253665
Alignment:
Q  213 aagaaatcaaaatcatataaataaccaaagga--atcctcccaacacaagatgtattagagaataaagtcaaaatttacaa 291  Q
    ||||||| ||||| ||||| ||||||||| ||  ||||||||  |||||||||||| ||||||| ||| ||||||||||||    
T  35253745 aagaaattaaaatgatatatataaccaaacgattatcctcccggcacaagatgtatcagagaattaagccaaaatttacaa 35253665  T

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