View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2062_low_9 (Length: 417)

Name: NF2062_low_9
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2062_low_9
NF2062_low_9
[»] chr8 (15 HSPs)
chr8 (16-401)||(948970-949352)
chr8 (94-165)||(22652035-22652106)
chr8 (94-168)||(29510230-29510304)
chr8 (93-165)||(11803317-11803389)
chr8 (94-168)||(5813640-5813714)
chr8 (94-165)||(28745557-28745628)
chr8 (94-165)||(29447503-29447574)
chr8 (92-148)||(44462152-44462208)
chr8 (92-148)||(44469685-44469741)
chr8 (94-163)||(3025599-3025668)
chr8 (94-167)||(18407767-18407840)
chr8 (92-165)||(33405324-33405397)
chr8 (115-167)||(13397620-13397672)
chr8 (100-168)||(22197668-22197736)
chr8 (117-165)||(40064033-40064081)
[»] chr4 (28 HSPs)
chr4 (94-165)||(34306744-34306815)
chr4 (94-163)||(19312394-19312463)
chr4 (94-165)||(23292926-23292997)
chr4 (94-165)||(2361915-2361986)
chr4 (94-163)||(4157197-4157266)
chr4 (94-167)||(16073442-16073515)
chr4 (109-169)||(3064864-3064924)
chr4 (94-161)||(12797282-12797349)
chr4 (94-131)||(4157484-4157521)
chr4 (109-165)||(715545-715601)
chr4 (109-165)||(752871-752927)
chr4 (100-164)||(3947702-3947766)
chr4 (100-164)||(14465006-14465070)
chr4 (95-167)||(24613628-24613700)
chr4 (117-168)||(18513172-18513223)
chr4 (94-168)||(53381527-53381602)
chr4 (20-62)||(5832736-5832778)
chr4 (95-165)||(8423658-8423728)
chr4 (117-167)||(11596295-11596345)
chr4 (109-163)||(28000672-28000726)
chr4 (94-164)||(30982808-30982878)
chr4 (102-172)||(35161092-35161162)
chr4 (94-167)||(19482727-19482800)
chr4 (94-167)||(22234817-22234890)
chr4 (117-165)||(24343584-24343632)
chr4 (101-161)||(27706110-27706170)
chr4 (94-134)||(29205492-29205532)
chr4 (109-165)||(29205531-29205587)
[»] chr7 (24 HSPs)
chr7 (94-166)||(15680857-15680929)
chr7 (95-164)||(11665370-11665439)
chr7 (100-168)||(5409768-5409836)
chr7 (94-165)||(21880200-21880271)
chr7 (94-164)||(32308179-32308249)
chr7 (100-165)||(2334314-2334379)
chr7 (92-164)||(20549837-20549909)
chr7 (92-164)||(32287404-32287476)
chr7 (94-165)||(598256-598327)
chr7 (94-165)||(21864856-21864927)
chr7 (94-165)||(24339701-24339772)
chr7 (94-164)||(7197238-7197308)
chr7 (104-153)||(10043002-10043051)
chr7 (94-167)||(33994260-33994333)
chr7 (98-134)||(8234198-8234234)
chr7 (100-168)||(9778559-9778627)
chr7 (92-164)||(22484071-22484143)
chr7 (102-165)||(17852056-17852119)
chr7 (94-164)||(10359647-10359717)
chr7 (100-165)||(1433513-1433578)
chr7 (93-165)||(7133212-7133285)
chr7 (100-165)||(43027404-43027469)
chr7 (114-166)||(1401091-1401143)
chr7 (92-164)||(18035806-18035877)
[»] scaffold0053 (1 HSPs)
scaffold0053 (94-165)||(8846-8917)
[»] chr3 (19 HSPs)
chr3 (97-168)||(26492142-26492213)
chr3 (92-167)||(40993273-40993348)
chr3 (94-165)||(55401123-55401194)
chr3 (95-165)||(18426998-18427068)
chr3 (92-164)||(8789489-8789563)
chr3 (94-165)||(20503513-20503584)
chr3 (92-134)||(45451599-45451641)
chr3 (92-161)||(25093548-25093617)
chr3 (94-163)||(4987222-4987291)
chr3 (94-167)||(41961577-41961650)
chr3 (99-163)||(29508503-29508567)
chr3 (104-167)||(49651714-49651777)
chr3 (92-165)||(13845465-13845538)
chr3 (100-165)||(27505305-27505370)
chr3 (103-164)||(32804485-32804546)
chr3 (94-165)||(10955000-10955074)
chr3 (117-165)||(11610580-11610628)
chr3 (121-161)||(14829776-14829816)
chr3 (117-165)||(34185052-34185100)
[»] chr1 (25 HSPs)
chr1 (94-165)||(22515827-22515898)
chr1 (94-167)||(9828103-9828176)
chr1 (94-167)||(40917808-40917881)
chr1 (94-166)||(1815305-1815377)
chr1 (94-165)||(46348323-46348394)
chr1 (94-165)||(47989556-47989627)
chr1 (102-166)||(6427531-6427595)
chr1 (94-166)||(31694638-31694710)
chr1 (94-166)||(37598879-37598951)
chr1 (96-167)||(5898204-5898275)
chr1 (94-168)||(51410073-51410147)
chr1 (119-167)||(21365990-21366038)
chr1 (100-163)||(1486646-1486709)
chr1 (121-168)||(22881564-22881611)
chr1 (94-164)||(5927281-5927351)
chr1 (202-236)||(13855058-13855092)
chr1 (94-164)||(40258874-40258944)
chr1 (97-143)||(52284764-52284810)
chr1 (117-166)||(20157283-20157332)
chr1 (92-169)||(29163317-29163394)
chr1 (94-163)||(42359391-42359460)
chr1 (94-134)||(9629860-9629900)
chr1 (109-169)||(18471358-18471418)
chr1 (94-126)||(21530737-21530769)
chr1 (93-165)||(32461393-32461465)
[»] chr6 (20 HSPs)
chr6 (94-167)||(10339052-10339125)
chr6 (94-162)||(32978842-32978910)
chr6 (94-167)||(4877991-4878063)
chr6 (109-168)||(8776905-8776964)
chr6 (94-165)||(16766756-16766827)
chr6 (94-165)||(34595182-34595253)
chr6 (92-160)||(12627522-12627590)
chr6 (94-165)||(24645529-24645600)
chr6 (94-165)||(28152146-28152217)
chr6 (94-168)||(8365445-8365519)
chr6 (98-164)||(17841530-17841596)
chr6 (92-165)||(7378025-7378098)
chr6 (93-134)||(9522949-9522990)
chr6 (94-165)||(7248417-7248488)
chr6 (94-165)||(7977770-7977841)
chr6 (100-167)||(17327588-17327655)
chr6 (94-168)||(18367895-18367969)
chr6 (94-167)||(28715343-28715416)
chr6 (117-165)||(7938171-7938219)
chr6 (94-138)||(26402647-26402691)
[»] chr2 (18 HSPs)
chr2 (94-163)||(2438661-2438730)
chr2 (94-165)||(18840953-18841024)
chr2 (94-165)||(35056927-35056998)
chr2 (94-166)||(15972921-15972993)
chr2 (94-164)||(28596517-28596587)
chr2 (94-168)||(37419802-37419876)
chr2 (99-165)||(11223793-11223858)
chr2 (95-165)||(26769571-26769641)
chr2 (95-165)||(27084318-27084388)
chr2 (95-164)||(27286222-27286291)
chr2 (109-165)||(21782744-21782800)
chr2 (121-165)||(44635568-44635612)
chr2 (94-165)||(38117099-38117170)
chr2 (92-165)||(24009341-24009414)
chr2 (100-165)||(42511322-42511387)
chr2 (110-166)||(6180789-6180845)
chr2 (109-165)||(15907851-15907907)
chr2 (117-165)||(24975255-24975303)
[»] chr5 (21 HSPs)
chr5 (93-165)||(16304366-16304438)
chr5 (94-165)||(32766872-32766943)
chr5 (94-165)||(39698600-39698671)
chr5 (94-164)||(21542089-21542159)
chr5 (94-163)||(21190998-21191067)
chr5 (100-165)||(30098391-30098456)
chr5 (122-167)||(40000491-40000536)
chr5 (94-167)||(43564929-43565002)
chr5 (94-165)||(7677764-7677835)
chr5 (97-168)||(11686000-11686071)
chr5 (94-153)||(15382533-15382592)
chr5 (94-165)||(21576685-21576756)
chr5 (92-163)||(30502330-30502401)
chr5 (92-163)||(30542673-30542744)
chr5 (92-167)||(32630673-32630748)
chr5 (113-168)||(38464310-38464365)
chr5 (95-165)||(17123097-17123166)
chr5 (92-162)||(39268541-39268611)
chr5 (196-241)||(6522181-6522226)
chr5 (117-166)||(17393304-17393353)
chr5 (117-165)||(19820328-19820376)
[»] scaffold0136 (1 HSPs)
scaffold0136 (94-166)||(3777-3849)
[»] scaffold0652 (1 HSPs)
scaffold0652 (94-164)||(403-473)
[»] scaffold0019 (1 HSPs)
scaffold0019 (94-168)||(71784-71858)
[»] scaffold0003 (1 HSPs)
scaffold0003 (94-165)||(241653-241724)
[»] scaffold0361 (1 HSPs)
scaffold0361 (99-165)||(14580-14646)
[»] scaffold0004 (1 HSPs)
scaffold0004 (99-164)||(92875-92940)
[»] scaffold0793 (1 HSPs)
scaffold0793 (109-165)||(4821-4877)
[»] scaffold0021 (1 HSPs)
scaffold0021 (109-169)||(2974-3034)
[»] scaffold0512 (1 HSPs)
scaffold0512 (94-165)||(4976-5047)
[»] scaffold0191 (1 HSPs)
scaffold0191 (94-168)||(31340-31414)
[»] scaffold0697 (1 HSPs)
scaffold0697 (94-126)||(1692-1724)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 949352 - 948970
Alignment:
Q  16 accagacacgacacaaacattgatacgtcgacactgttaataatttgnnnnnnnntcaaataattaagtgcagctaatgtgtcggtgtcggatacgacac 115  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||||        |||||||||||||||||| ||||||||||||| ||||||||||||    
T  949352 accagacacgacacaaatactgatacgtcgacacagttaataatttgaaaaaa--tcaaataattaagtgcagttaatgtgtcggtgccggatacgacac 949255  T
Q  116 atgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtttagttcaacacatgaacataatttgaaaaatttcaacttatatttaa 215  Q
    || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||||    
T  949254 atatccgacaccgagacactcctaatctgaggaatgttcgtgcttcataggtttagttcaacatatgaacataattcgacaaatttcaacttgtatttaa 949155  T
Q  216 atactacggtctagtttacaaaactaacaaactaacttaattatatacttaacttatgacaattaagttgaaatataattaaacttcaattacttgttaa 315  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  949154 atactacggtctagtttacaaaactaacaaactaaattaattgtatacttaacttatgacaattaagttgaaatataattaaacttcaattatttgtt-a 949056  T
Q  316 acattttttctttgtttgtaagcagcttgttggtttgttaattggtgtagttccaatatttcgaaaactattgattgtaaacaatg 401  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  949055 acattttttctttgtttgtaagcagcttgttggtttattaattggtgtagttccgatatttcgcaaaatgttgattgtaaacaatg 948970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||  |||||||||||| ||||| ||||||| ||||| ||||||||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 29510304 - 29510230
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| ||||| | |||||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 29510230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 11803317 - 11803389
Alignment:
Q  93 tgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||| ||||| |||||||||||||||||||||| |  |||| ||||||| ||||| ||||||||||||||||    
T  11803317 tgtgttggtgttggatacgacacatgtccgacacaggtacacgtctaatccgaggagtgtccgtgcttcatag 11803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 5813640 - 5813714
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| ||||||| |||||||||||| |||||  |||||  ||||| |||||||||||| ||||||    
T  5813640 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttcgtaggtt 5813714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 28745557 - 28745628
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||| ||||||||||  ||||||   |||| ||||||||||||||||    
T  28745557 gtgtcggtgtcggacacgacacctgtccgtcaccgagacaagtctaattcaaggagtgtccgtgcttcatag 28745628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 29447503 - 29447574
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||| || ||||||  |||||||||||| ||||  ||||||| ||||| ||||||||||||||||    
T  29447503 gtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatag 29447574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 44462208 - 44462152
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgagga 148  Q
    ||||||||||||| || |||| ||||||||||||||| ||||| ||||||| |||||    
T  44462208 atgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgagga 44462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 44469741 - 44469685
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgagga 148  Q
    ||||||||||||| || |||| ||||||||||||||| ||||| ||||||| |||||    
T  44469741 atgtgtcggtgtcagacacgatacatgtccgacaccgggacacgtctaatccgagga 44469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 3025599 - 3025668
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    ||||| |||||||| ||||||| |||| ||||| | |||||  |||||| ||||| ||||||||||||||    
T  3025599 gtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 18407767 - 18407840
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||| || |||| ||||||||||||||||||   |||||  |||||  ||||| ||||||||||||||||||    
T  18407767 gtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcataggt 18407840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 33405397 - 33405324
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||| |||||||||||| ||||||  |||||  ||||||  | || |||||||||| |||||    
T  33405397 atgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgctccatag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 13397620 - 13397672
Alignment:
Q  115 catgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||||||||||||||  |||||   |||| ||||||||||||||||||    
T  13397620 catgtccgacaccgagacacgcctaattcaaggagtgtccgtgcttcataggt 13397672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 22197736 - 22197668
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||| | ||||| ||||||||||||   |||  |||||||||||| ||||||||||| |||||||    
T  22197736 gtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttataggtt 22197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 40064033 - 40064081
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||| ||||| ||||||| ||||| |||||||||| |||||    
T  40064033 tgtccgacaccgggacacatctaatccgaggagtgtccgtgctacatag 40064081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 34306815 - 34306744
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  34306815 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 19312394 - 19312463
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||| |||||    
T  19312394 gtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgagaagtgtccgtgtttcat 19312463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  23292997 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 2361986 - 2361915
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||| | |||| |||||||||||||  ||||||||| || ||||||||||||||||    
T  2361986 gtgtcggtgtcggacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcatag 2361915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 4157197 - 4157266
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||| ||||||||||||||||||||||| ||  |||||  ||||| |||| |||||||||    
T  4157197 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacacctaattcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 16073442 - 16073515
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||| |||| |||||||||||||  ||||||  |||||| ||||| ||||| ||||||||||||    
T  16073442 gtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 3064924 - 3064864
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggttt 169  Q
    |||||||||||||||| | |||||||  |||||| ||||| ||||||||||||||||||||    
T  3064924 acgacacatgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcataggttt 3064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 12797349 - 12797282
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttc 161  Q
    |||||||||||||| |||| ||||||| ||||||| ||||  ||||||| ||||||||| ||||||||    
T  12797349 gtgtcggtgtcggacacgatacatgtctgacaccgggacaagtctaatccgaggaatgttcgtgcttc 12797282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 4157484 - 4157521
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgaga 131  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4157484 gtgtcggtgtcggacacgacacatgtccgacaccgaga 4157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 715601 - 715545
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  715601 acgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 752927 - 752871
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  752927 acgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||| ||||||| |||||||||||  |||||  |||||| ||||| |||||||||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 14465070 - 14465006
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||| || ||||||| ||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  14465070 gtgtcagacacgacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 24613700 - 24613628
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||| || ||||||| |||| ||||||  ||||| |||||||  |||| ||||||||||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcataggt 24613628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 18513223 - 18513172
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||  |||||  |||||||||||| |||||||||||||||||||    
T  18513223 tgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcataggtt 18513172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 53381602 - 53381527
Alignment:
Q  94 gtgtcggtgtcggatac-gacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| || ||| | | |||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggtt 53381527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 5832778 - 5832736
Alignment:
Q  20 gacacgacacaaacattgatacgtcgacactgttaataatttg 62  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  5832778 gacacgacacaaacattaacacgtcgacactgctaataatttg 5832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 8423728 - 8423658
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||| ||||||  |||||||||||| |||||  |||||| ||| | ||||||||| ||||||    
T  8423728 tgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 11596345 - 11596295
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||| || |||||  |||||||||||| ||||||||||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcataggt 11596295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 28000726 - 28000672
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    ||||||| |||| |||||||||||||  ||||||||| || ||||||||||||||    
T  28000726 acgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgcttcat 28000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||||||| || ||||||| |||||||||||| |||||  ||||||  | || |||||||||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 35161092 - 35161162
Alignment:
Q  102 gtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtttagt 172  Q
    |||||| ||||||| ||||||||||||  ||||  |||||| ||  | |||||||||||||||||||||||    
T  35161092 gtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcataggtttagt 35161162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 19482727 - 19482800
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||| | ||| ||||||| |||||||||| | |||||  |||||| ||||| ||| ||||||||||||||    
T  19482727 gtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcataggt 19482800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 22234890 - 22234817
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||||| || ||||||| |||||||||||  |||||  |||||| ||| | ||| ||||||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcataggt 22234817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 24343584 - 24343632
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||| |||||  ||| |||||||| ||||||||||||||||    
T  24343584 tgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 27706170 - 27706110
Alignment:
Q  101 tgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttc 161  Q
    ||||||| ||||||| | ||||| |||| |||||  |||||||||||||||| ||||||||    
T  27706170 tgtcggacacgacacgtatccgataccgggacacgcctaatctgaggaatgtacgtgcttc 27706110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 29205492 - 29205532
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacac 134  Q
    |||||||||| ||| |||||||||||||||||||| |||||    
T  29205492 gtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 29205531 - 29205587
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||||| | |||||  |||||| ||||| ||| ||||||||||||    
T  29205531 acgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 15680857 - 15680929
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||  ||||| |||||||||||||||||    
T  15680857 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatagg 15680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 11665439 - 11665370
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||||||| | ||||||| ||||||||||||| |||| ||||||  |||||||||||||||||||||    
T  11665439 tgtcggtgtcgaacacgacacgtgtccgacaccgaaacacatctaatacgaggaatgtccgtgcttcata 11665370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 5409836 - 5409768
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||| ||||||| |||||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 5409768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 21880200 - 21880271
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| |||||||||||||||||||  |||||  |||||| ||| | ||||||||||||||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 32308179 - 32308249
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||| ||| | |||||||||    
T  32308179 gtgtcggtgttggacacgacacatgtccgacaccgagacacagctaatccgaggagtgttcatgcttcata 32308249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 2334314 - 2334379
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||| |||||||||||||||||| || |||| ||||||| ||||| |||||||| |||||||    
T  2334314 gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttcatag 2334379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 20549837 - 20549909
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||||| || ||||||||||||||  |||||||  |||||| ||||| || ||||||||||||    
T  20549837 atgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 32287476 - 32287404
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||||| | ||||  |||||||||||| |||||  |||||| ||||| |||||||||||||||    
T  32287476 atgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||| || ||||||| |||||||||||| |||||  |||||| ||| | ||||||||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 21864856 - 21864927
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||| ||||||| ||||||| |||||||||||| ||||| ||||||  ||||| |||| |||||||||||    
T  21864856 gtgtcgctgtcggacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 24339701 - 24339772
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| | |||||||||| |||||  |||||| ||||| || |||||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 7197308 - 7197238
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||| || ||||||||||||||||| || |||  || || ||| |||||||||||||||||    
T  7197308 gtgtcggtgtcggacacaacacatgtccgacaccgggatactcttattccgagaaatgtccgtgcttcata 7197238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 10043002 - 10043051
Alignment:
Q  104 cggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtc 153  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||||||||    
T  10043002 cggatacgacacatgtccgacaccgggacacgtctaatccaaggaatgtc 10043051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 33994260 - 33994333
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||||| || ||||||||||||| ||||||||||||  ||||||  |||| ||| |||| |||||||||    
T  33994260 gtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 8234198 - 8234234
Alignment:
Q  98 cggtgtcggatacgacacatgtccgacaccgagacac 134  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacac 8234234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 9778559 - 9778627
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||| || |||| |||||||||||| |||||  ||||||  |||| |||||||||||||||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcataggtt 9778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 22484071 - 22484143
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||||||||| || | ||||||||||||||| |||||||  ||| ||| ||| | |||||||||||||||    
T  22484071 atgtgtcggtgtcagacatgacacatgtccgacatcgagacatgtctgatccgagaagtgtccgtgcttcata 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 17852056 - 17852119
Alignment:
Q  102 gtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||| | ||||| ||||||||||||||||||  |||||  ||||| ||||||||||||||||    
T  17852056 gtcggacatgacacgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatag 17852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 10359647 - 10359717
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||| |||||||||||||   |||||||||||||||||| ||||||| ||    |||||||||||||||    
T  10359647 gtgtcgatgtcggatacgacttgtgtccgacaccgagacacgtctaatccgaaaggtgtccgtgcttcata 10359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 1433513 - 1433578
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||| | ||||  |||||||||||  ||||| ||||||| ||||| ||||||||||||||||    
T  1433513 gtgtcggacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 7133285 - 7133212
Alignment:
Q  93 tgtgtcggtgtcggatac-gacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||||| || ||| | |||||||||| | |||||  ||||||||||||  |||||||||||||||    
T  7133285 tgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggagcgtccgtgcttcatag 7133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||| || ||||||| |||||||||||| |||||  |||||| || || ||||||||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 1401091 - 1401143
Alignment:
Q  114 acatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||| || |||||  |||||||||||| ||||| |||||||||||    
T  1401091 acatgtccgacatcgggacacacctaatctgaggagtgtccatgcttcatagg 1401143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 18035877 - 18035806
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||| ||||  |||| |||||||||| ||||| || |||| ||||||| ||||| |||||||||||||||    
T  18035877 atgtgtcagtgtgagataggacacatgtctgacacgga-acacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 8846 - 8917
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||| | ||||||||||||||    
T  8846 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 26492213 - 26492142
Alignment:
Q  97 tcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    ||||||||||| |||||||||||| |||||| |||||| ||||||| |||||||||||| ||||||||||||    
T  26492213 tcggtgtcggacacgacacatgtctgacaccaagacacgtctaatccgaggaatgtccgcgcttcataggtt 26492142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 40993348 - 40993273
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||||| |||||||||||||||||||| |||||  |||||| ||||| ||||| ||||||||||||    
T  40993348 atgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 55401123 - 55401194
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| ||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 18426998 - 18427068
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||||||||||| |||||| ||||| |||||  |||||||||||| |||||||| |||||||    
T  18426998 tgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttcatag 18427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 8789563 - 8789489
Alignment:
Q  92 atgtgtcggtgtcggatacgacaca--tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||||| ||||||||  |||| |||||||||||||  |||||| ||||| |||||||||||||||    
T  8789563 atgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 20503513 - 20503584
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||| ||| |||||||||||| ||||||| |||||  |||||| ||||| ||||||||||||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 45451599 - 45451641
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacac 134  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  45451599 atgtgtcggtgtcggacacgacacatgtccgacaccgagacac 45451641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 25093548 - 25093617
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttc 161  Q
    |||||||||||||||| || ||||||||||||||| ||  |||||||||||||| || ||| ||||||||    
T  25093548 atgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtgcttc 25093617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 4987291 - 4987222
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||| ||| ||||||| |||||||||||| |||||  |||||| ||||| ||||||| ||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 41961650 - 41961577
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||| ||||| ||||||| |||||||||| | |||||  |||||| ||| | ||||||||||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 29508503 - 29508567
Alignment:
Q  99 ggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||||  || | ||||||||||||||    
T  29508503 ggtgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 49651777 - 49651714
Alignment:
Q  104 cggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||| ||||||||| |||||||||| |||||  |||||| ||| | ||||||||||||||||||    
T  49651777 cggacacgacacatatccgacaccgggacacacctaatccgagaagtgtccgtgcttcataggt 49651714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 13845538 - 13845465
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||| |||| || |||| ||||| |||||||  || |||  |||| ||||||||||||||||    
T  13845538 atgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 27505305 - 27505370
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||| || ||||||| |||||||||||| ||||   |||||| ||||| ||||||||||||||||    
T  27505305 gtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 32804546 - 32804485
Alignment:
Q  103 tcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||| |||||||||||||| ||| || | ||  |||||||||||| |||||||||||||||    
T  32804546 tcggacacgacacatgtccgccactgaaaaacgcctaatctgaggagtgtccgtgcttcata 32804485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 10955000 - 10955074
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgagg---aatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||||||| | |||||  |||||| ||||   | ||||||||||||||||    
T  10955000 gtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtagtgtccgtgcttcatag 10955074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 11610580 - 11610628
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||| || |||||  |||||||||||| ||||||||||||||||    
T  11610580 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 14829776 - 14829816
Alignment:
Q  121 cgacaccgagacacttctaatctgaggaatgtccgtgcttc 161  Q
    |||||||| |||||  |||||||||||||||||||||||||    
T  14829776 cgacaccgggacacgcctaatctgaggaatgtccgtgcttc 14829816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 34185100 - 34185052
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  34185100 tgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 22515898 - 22515827
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||||| ||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 9828103 - 9828176
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||| ||||| || ||||||| |||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggt 9828176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 40917808 - 40917881
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||| ||| ||||||| |||||||||||| |||||  |||||| ||||| ||||||||||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 1815305 - 1815377
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    ||||||||||| || |||||||||||||||||||| |||||  |||||||||||| || ||||| ||||||||    
T  1815305 gtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatagg 1815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 46348394 - 46348323
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| ||||||||||||||||||  || ||| ||||  ||||||||||||||||    
T  46348394 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| |||||||||||| |||| || |||||  |||||| ||||| ||||||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 6427531 - 6427595
Alignment:
Q  102 gtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||| ||||||| |||||||||||| |||||  ||||||||| || |||||||||||||||||    
T  6427531 gtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagg 6427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 31694710 - 31694638
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||||| || |||||| | ||||||||  ||||  |||||||||||| |||||||||||||||||    
T  31694710 gtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 37598879 - 37598951
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||||| ||||||| |||||||||  | |||||  |||||| ||||| |||||||||||||||||    
T  37598879 gtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 5898275 - 5898204
Alignment:
Q  96 gtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||| || ||||||| ||||| |||||| ||||| ||||||| ||||| ||||||||||| ||||||    
T  5898275 gtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttataggt 5898204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 51410073 - 51410147
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| ||||||| | ||||||||||||||||  ||||||  |||| | | |||||||||||||||    
T  51410073 gtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggtt 51410147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 21366038 - 21365990
Alignment:
Q  119 tccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  21366038 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 1486709 - 1486646
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||| ||||||| |||||||||||| |||||  |||||| ||||| |||| |||||||||    
T  1486709 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 22881611 - 22881564
Alignment:
Q  121 cgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||| ||||| ||||||| ||||| |||||||||||||||||||    
T  22881611 cgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggtt 22881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 5927351 - 5927281
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||| |||||||| | |||| |||||||||| ||| |||   |||||||||||| |||||||||||||||    
T  5927351 gtgtcagtgtcggacatgacaaatgtccgacatcgaaacatgcctaatctgaggagtgtccgtgcttcata 5927281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 13855058 - 13855092
Alignment:
Q  202 caacttatatttaaatactacggtctagtttacaa 236  Q
    |||||||| ||||||||||||||||||||||||||    
T  13855058 caacttatgtttaaatactacggtctagtttacaa 13855092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 40258944 - 40258874
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||||||| || ||||||| |||||||||||  |||||  |||||| ||||| ||||| |||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 52284764 - 52284810
Alignment:
Q  97 tcggtgtcggatacgacacatgtccgacaccgagacacttctaatct 143  Q
    |||||||| || ||||||||||||||||||| |||||| ||||||||    
T  52284764 tcggtgtcagacacgacacatgtccgacaccaagacacgtctaatct 52284810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 20157332 - 20157283
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    ||||||||||||||||||  ||||| |||||| | |||||||||||||||    
T  20157332 tgtccgacaccgagacacacctaatttgaggagtatccgtgcttcatagg 20157283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 29163394 - 29163317
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggttt 169  Q
    |||||||||||||||| ||||||| || | ||||||| |||||  |||||| ||| | ||| |||||||||| |||||    
T  29163394 atgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcattggttt 29163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||| | |||   |||||||||||| |||||  |||||| ||||| ||||||||||||||    
T  42359460 gtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 9629900 - 9629860
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacac 134  Q
    |||||| ||||||| |||||||||||||||||||| |||||    
T  9629900 gtgtcgatgtcggacacgacacatgtccgacaccgggacac 9629860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 18471358 - 18471418
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggttt 169  Q
    ||||||| ||||||||||||| ||||  |||||  ||||| ||||||| ||||||||||||    
T  18471358 acgacacgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcataggttt 18471418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 21530737 - 21530769
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacac 126  Q
    |||||||||||||| ||||||||||||||||||    
T  21530737 gtgtcggtgtcggacacgacacatgtccgacac 21530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  93 tgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||||| ||||||| |||| ||||| | |||||  ||||||  || | ||||||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 10339125 - 10339052
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||| |||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggt 10339052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 32978910 - 32978842
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttca 162  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||  |||| |||||||||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 4877991 - 4878063
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||| |||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||||    
T  4877991 gtgtcggtgtcggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 8776964 - 8776905
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    ||||||| ||||||||||||||||||  |||||| ||||| |||||||||||||||||||    
T  8776964 acgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcataggtt 8776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| || |||| |||||||||||| |||||  |||||| || |||||||||||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 34595182 - 34595253
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||| ||||||| |||||  |||||| ||||| ||||||||||||||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 12627590 - 12627522
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgctt 160  Q
    |||||||| ||||||| || |||||||||||||||||||||||| |||||| ||| ||| || ||||||    
T  12627590 atgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatccgagaaatatcagtgctt 12627522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 24645529 - 24645600
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||| || ||||||| ||||||||||| |||||| ||||||| || || |||| |||||||||||    
T  24645529 gtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 28152146 - 28152217
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||||||||| ||||   |||||| ||||| ||| ||||||||||||    
T  28152146 gtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 8365519 - 8365445
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||| ||||| ||||||| |||||||||| | |||||  |||||| ||||| | |||||||||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggtt 8365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 17841596 - 17841530
Alignment:
Q  98 cggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||| ||||||  |||||||||| |||||||  |||||| ||||| |||||||||||||||    
T  17841596 cggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 7378025 - 7378098
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||| ||||||    |||||||||| |||||  |||||||||| | ||||||||||||||||    
T  7378025 atgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 9522949 - 9522990
Alignment:
Q  93 tgtgtcggtgtcggatacgacacatgtccgacaccgagacac 134  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  9522949 tgtgtcggtgtcggatccgacacgtgtccgacaccgagacac 9522990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 7248417 - 7248488
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||| ||| || |||  |||||||||||| ||||| || |||| ||||| ||||||||||||||||    
T  7248417 gtgtcggtgttggacacaacatgtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcatag 7248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 7977841 - 7977770
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| || ||| |||||||||| ||| ||||  ||||||| |||| ||| ||||||||||||    
T  7977841 gtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttcatag 7977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 17327655 - 17327588
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||| ||||||| |||| ||||| | |||||  |||||| ||||| ||||||||||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcataggt 17327588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 18367895 - 18367969
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    ||||||||||| || |||||||||||| ||||| | |||||  || |||  |||| |||||||||||||||||||    
T  18367895 gtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcataggtt 18367969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 28715343 - 28715416
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||| ||||||| ||| |||||||| |||||  |||||  ||| | ||| ||||||||||||||    
T  28715343 gtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 7938171 - 7938219
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||||||||  || ||| ||||| ||||||||||||||||    
T  7938171 tgtccgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 26402691 - 26402647
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttct 138  Q
    |||||||||||||| |||| ||||||  |||||||||||||||||    
T  26402691 gtgtcggtgtcggacacgatacatgttggacaccgagacacttct 26402647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||| |||||||||||||||||||| |||||  |||||| ||||| ||||||||||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 18841024 - 18840953
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||| || |||||||||||||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||||||| || ||||  |||||||||||| ||||||||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 15972921 - 15972993
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||||| ||||||| |||||||| ||| |||||  |||||| || ||||||||||||||||||||    
T  15972921 gtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatagg 15972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 28596517 - 28596587
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||| ||||||| ||||||||||   |||||| |||||| ||||| |||||||||||||||    
T  28596517 gtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 37419802 - 37419876
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| ||||  | |||||||||||| |||||  |||||| ||||| |||||||||||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 11223858 - 11223793
Alignment:
Q  99 ggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||| ||||||| |||| ||||||| |||||  |||||||||||| ||||||||||||||||    
T  11223858 ggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 26769571 - 26769641
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||| ||||| ||||||| |||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 27084318 - 27084388
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||| ||||||| ||||| ||||||||||||  |||||| ||||| ||||  ||||||||||    
T  27084318 tgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 27286291 - 27286222
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||| ||||||| |||||||||||||||||||| ||||  |||||||| | || |||| ||||||||||    
T  27286291 tgtcgatgtcggacacgacacatgtccgacaccgggacatatctaatctaaagagtgtctgtgcttcata 27286222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 21782800 - 21782744
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||| ||||| |||||| ||||| ||||||||| ||| ||||||||||||||||    
T  21782800 acgacacgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcatag 21782744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  121 cgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 38117170 - 38117099
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||| ||||||||| || |||| |||||||||||| |||||  |||||| ||||  ||||||||||||||||    
T  38117170 gtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 24009341 - 24009414
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||| ||||||| |||| ||||| | |||||  || |||  |||| ||||||||||||||||    
T  24009341 atgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 42511387 - 42511322
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||| || |||| |||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  42511387 gtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 6180845 - 6180789
Alignment:
Q  110 cgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||| ||||||||| || |||||||  |||||||||||| | |||||||||||||||    
T  6180845 cgactcatgtccgatactgagacacacctaatctgaggagtttccgtgcttcatagg 6180789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 15907907 - 15907851
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||| |||||||||| |||||  | ||||||| || ||||||||||||||||    
T  15907907 acgacacatatccgacaccgggacacgcccaatctgatgagtgtccgtgcttcatag 15907851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 24975303 - 24975255
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||| | ||||  ||||||||||||| ||||||||||||||||    
T  24975303 tgtccgacactgggacaaatctaatctgaggagtgtccgtgcttcatag 24975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 16304438 - 16304366
Alignment:
Q  93 tgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||| || ||||| ||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  16304438 tgtgtcagtatcggacacgacacgtgcccgacaccgagacacgtctaatccgaggaatgtccgtgcttcatag 16304366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 32766943 - 32766872
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||| | ||||||| |||||||||||  || || ||||||||||||| ||||||||||||||||    
T  32766943 gtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 39698600 - 39698671
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||  | ||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 21542089 - 21542159
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||| ||||||| |||||||||||| |||||  | ||||  |||||||||||||| |||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgcatcata 21542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 21191067 - 21190998
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||| || |||| |||||||| ||| |||||  |||||| ||||| ||||||||||||||    
T  21191067 gtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 30098391 - 30098456
Alignment:
Q  100 gtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||| ||||||| |||| ||||||  |||||  |||||| ||||||||||||||||||||||    
T  30098391 gtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatag 30098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 40000536 - 40000491
Alignment:
Q  122 gacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  40000536 gacaccgagacacgtcttatctgaggagtgtccgtgcttcataggt 40000491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 43564929 - 43565002
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    |||||||||||||| ||||||  |||||||| ||| |||||  |||||| ||| | ||||||||||||||||||    
T  43564929 gtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 7677764 - 7677835
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||||| || ||| |||||||||||||||| |||||  |||||| |||||  ||| |||||||||||    
T  7677764 gtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 11686000 - 11686071
Alignment:
Q  97 tcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    ||||||||||| ||||||| ||||| | ||| || |||  |||||| ||||| |||||||||||||||||||    
T  11686000 tcggtgtcggacacgacacgtgtccaaaaccaaggcacggctaatcggaggagtgtccgtgcttcataggtt 11686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 15382533 - 15382592
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtc 153  Q
    |||||||||| ||| |||||||||||||||||||| |||||  |||||| ||||| ||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtc 15382592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||| ||||||| ||||||| |||| ||||| | |||||  |||||| ||||| ||||||||||||||||    
T  21576756 gtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 30502401 - 30502330
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||||| |||||||||||||||||| | ||||   ||||||  |||| ||| ||||||||||    
T  30502401 atgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 30542744 - 30542673
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcat 163  Q
    |||||||||||||||| |||||||||||||||||| | ||||   ||||||  |||| ||| ||||||||||    
T  30542744 atgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 32630748 - 32630673
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggt 167  Q
    ||||||| |||||||||||||||| |||||||||  |||||||  |||||  ||||| ||||  ||||||||||||    
T  32630748 atgtgtcagtgtcggatacgacacgtgtccgacattgagacacacctaattcgaggagtgtctatgcttcataggt 32630673  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 38464365 - 38464310
Alignment:
Q  113 cacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||||| |||||  |||||| ||||| |||| ||||||||||||||    
T  38464365 cacatgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcataggtt 38464310  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 17123097 - 17123166
Alignment:
Q  95 tgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||| ||| |||| ||||||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  17123097 tgtcggtgttggacacgaaacatgtccgacacgg-gacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 39268611 - 39268541
Alignment:
Q  92 atgtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttca 162  Q
    |||||||||||| ||| ||||||  |||||||||| | |||||  |||||| ||||| |||||||||||||    
T  39268611 atgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 6522181 - 6522226
Alignment:
Q  196 aaatttcaacttatatttaaatactacggtctagtttacaaaacta 241  Q
    ||||| |||||| | |||||||||||||||||||||||||| ||||    
T  6522181 aaattacaacttgtgtttaaatactacggtctagtttacaagacta 6522226  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 17393353 - 17393304
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||||||||||| ||||||  ||||| ||||||||| |||||||||||||    
T  17393353 tgtccgacaccgggacactcgtaatccgaggaatgttcgtgcttcatagg 17393304  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 19820376 - 19820328
Alignment:
Q  117 tgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

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Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 3849 - 3777
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatagg 166  Q
    |||| ||||||||| ||||||||||||||||| ||||||||  |||||| ||||| ||||| |||||||||||    
T  3849 gtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcatagg 3777  T

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Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 473 - 403
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    |||||||||||||| ||||| | |||||||||||| |||||  |||||| ||||| |||||||||||||||    
T  473 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 71784 - 71858
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| || |||| |||||||||||| |||||  |||||| ||||| |||| ||||||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcataggtt 71858  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 241653 - 241724
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||| ||||||||| ||||||| |||||||||||| |||||  |||||| ||| | ||||||||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

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Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 14580 - 14646
Alignment:
Q  99 ggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    ||||||||| ||||||| ||||||||||||||||||  ||||||  |||| ||| ||||||||||||    
T  14580 ggtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 92875 - 92940
Alignment:
Q  99 ggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcata 164  Q
    ||||||||| |||||||||||| ||||||  |||||  |||||| ||||| |||||||||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 4877 - 4821
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||    
T  4877 acgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 3034 - 2974
Alignment:
Q  109 acgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggttt 169  Q
    |||||||||||||||||| || ||||  ||||| || ||| ||||||||||||||||||||    
T  3034 acgacacatgtccgacactgaaacacgcctaatatggggagtgtccgtgcttcataggttt 2974  T

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Target: scaffold0512 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 5047 - 4976
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcatag 165  Q
    |||||||||||||| ||||||| |||||||||  ||||||   |||||| ||||| |||| |||||||||||    
T  5047 gtgtcggtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatag 4976  T

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Target: scaffold0191 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 31414 - 31340
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacaccgagacacttctaatctgaggaatgtccgtgcttcataggtt 168  Q
    |||||||||||||| |||||| ||||| ||||||  ||||| | ||||||| ||| ||||  |||||||||||||    
T  31414 gtgtcggtgtcggacacgacaaatgtctgacaccaggacacatataatctgtggagtgtctatgcttcataggtt 31340  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 1692 - 1724
Alignment:
Q  94 gtgtcggtgtcggatacgacacatgtccgacac 126  Q
    |||||||||||||| ||||||||||||||||||    
T  1692 gtgtcggtgtcggacacgacacatgtccgacac 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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