View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_high_1 (Length: 565)
Name: NF20630_high_1
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Complemental strand, 34320848 - 34320310
Alignment:
| Q |
17 |
acaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320848 |
acaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatcca |
34320749 |
T |
|
| Q |
117 |
tgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaacctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320748 |
tgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttgccattgccttaagggacttgatcattgagggttgaaacacaaacctt |
34320649 |
T |
|
| Q |
217 |
ttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34320648 |
ttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaacagaagctcctccatcaagtaaaggaaaag |
34320549 |
T |
|
| Q |
317 |
gtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320548 |
gtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaat |
34320449 |
T |
|
| Q |
417 |
tttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320448 |
tttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgc |
34320349 |
T |
|
| Q |
517 |
aattcgtcgggaaacaaagggttcaatattttatctgtg |
555 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34320348 |
aatttgtcgggaaacaaagggttcaatattttatctgtg |
34320310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 542
Target Start/End: Complemental strand, 34329749 - 34329231
Alignment:
| Q |
24 |
aggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagtt |
123 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| ||||| || | |||| ||||||||||||| ||| |||||| | | || |||||||||||||| |
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|
| T |
34329749 |
aggaaccattcttttgcgaaaatcaacagccatactaaacaatgatgtcttgaaatttaatcccgttattgaaaccgtgcatttgtaaatccatgcagtc |
34329650 |
T |
|
| Q |
124 |
actgcttgtacacgtgatggaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacaca |
223 |
Q |
| |
|
|| |||||||||||| |||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34329649 |
acaacttgtacacgtgtgggag---aatgcaccgaactagaagttgccattttcttaagggacttgatcattgagggttgaaacacaaatcttttacaca |
34329553 |
T |
|
| Q |
224 |
ccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatac |
323 |
Q |
| |
|
|||||||||||| |||| | | ||||||||| | ||||||| |||||| ||||||||||| | ||||||||||||||||| ||| |||| |||||| | |
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|
| T |
34329552 |
ccacattgttttctctcttaagaacaagttcttgaaaaataggtaaatctctttgtggaaacattgaagctcctccatcaaggaaatgaaagggtaattc |
34329453 |
T |
|
| Q |
324 |
taataaccctttatcttcttcttcttctt---gtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttg |
420 |
Q |
| |
|
|||||||||||| ||| |||||| ||||| |||| |||| |||||| |||||||||||||||||||||||||||| || || |||||||||||||| |
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|
| T |
34329452 |
taataaccctttttctccttctttttcttttggtaaattttcgttgataatggaccaatcattcatgaagttgaaaagtgtcgaaccatcaccaattttg |
34329353 |
T |
|
| Q |
421 |
tgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaatt |
520 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
34329352 |
tgactcatgcaaacacttatcgccattcctccacatgcaaaacagttgatttgaatggctattaaagtttcactccaatccatttctttccattgcaatt |
34329253 |
T |
|
| Q |
521 |
cgtcgggaaacaaagggttcaa |
542 |
Q |
| |
|
| || || |||||||||||||| |
|
|
| T |
34329252 |
catccgggaacaaagggttcaa |
34329231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 8e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 17 - 542
Target Start/End: Original strand, 36627211 - 36627727
Alignment:
| Q |
17 |
acaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatcca |
116 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| ||| ||||||||| | ||||||||||||||||| ||||||| |||||| ||| |||| |||||||| |
|
|
| T |
36627211 |
acaatggaggaaccattcttctacgaagatcgacaatcatgctaaacattgccgtctggaaatttaaccccattattgaaacggcatgcttgtaaatcca |
36627310 |
T |
|
| Q |
117 |
tgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaacctt |
216 |
Q |
| |
|
||||||||| ||||||| | | |||| ||||||| ||||||||||| | ||||||||||| ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
36627311 |
tgcagttacaacttgtacttgcgtgggag---aatgcatggaactagaagtcaccattgccttaagagacttaatcattgcaggttgaaaaacaaacctt |
36627407 |
T |
|
| Q |
217 |
ttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaag |
316 |
Q |
| |
|
||| | || |||||||||| | || ||| ||| | ||||||||| |||| ||||||||||||||||||| | || ||| ||||||||||| || | |
|
|
| T |
36627408 |
ttaaatacgacattgttttctttctttatcaccatttctgggaagataggcaaatccctttgtggaaaaattgttgcccctgcatcaagtaaactcaagg |
36627507 |
T |
|
| Q |
317 |
gtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaat |
416 |
Q |
| |
|
|| ||||||||||| |||| | ||||| ||| | ||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
36627508 |
gtgatactaataactcttttttatcttcctct------atcttttggttgataatggcccaatcattcatgaatttgaaaatggttgaagcatcaccaat |
36627601 |
T |
|
| Q |
417 |
tttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgc |
516 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| || || || ||||||| ||||| ||| | | ||||||||||| ||||||||||| |
|
|
| T |
36627602 |
tttgtgagtcatgcaaatacttattaccattcctccacatgtaaaccaatttatttgaatggctataaaacttgctctccaatccatttctttccattgt |
36627701 |
T |
|
| Q |
517 |
aattcgtcgggaaacaaagggttcaa |
542 |
Q |
| |
|
||||| || || |||||||||||||| |
|
|
| T |
36627702 |
aattcatcagggaacaaagggttcaa |
36627727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 17 - 542
Target Start/End: Original strand, 36632783 - 36633294
Alignment:
| Q |
17 |
acaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatcca |
116 |
Q |
| |
|
|||||| |||| |||||||||| | ||||| |||| |||||| ||| | ||||| ||||||||||| ||||||| |||||||| | |||| |||||||| |
|
|
| T |
36632783 |
acaatggaggatccattctttttctaagatttacagccatgcaaaacgacgccgtttggaaatttaaccccattattgaaactgtatgcttgtaaatcca |
36632882 |
T |
|
| Q |
117 |
tgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaacctt |
216 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||| ||||||||||| | ||||||||||| || |||||||||| |||||||| | ||||||| |
|
|
| T |
36632883 |
tgcagttacaacttgtacatgtgtgggag---aatgcatgaaactagaagttaccattgccttaagagatttgatcattgcaggttgaaaaaaaaacctt |
36632979 |
T |
|
| Q |
217 |
ttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaag |
316 |
Q |
| |
|
||| | || |||||||||| |||| || | ||| |||||||||| || ||||||||||||||||||| |||||| ||||||||||| || | |
|
|
| T |
36632980 |
ttaaatacgacattgttttctctctttcccgcaatctctgggaaaacaggcaaatccctttgtggaaaaattattgctcctgcatcaagtaaacttaagg |
36633079 |
T |
|
| Q |
317 |
gtaatactaataaccctttatcttcttcttcttcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaat |
416 |
Q |
| |
|
|| ||||||||||| |||| | | ||||| ||| ||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
36633080 |
gtgatactaataactcttt------tccatcttcctgt-----ttggttgatagtggcccaatcattcatgaagttgaaaacggttgaagcatcaccaat |
36633168 |
T |
|
| Q |
417 |
tttgtgactcatgcaaatacttatcgccattcctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgc |
516 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| ||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
36633169 |
tttgtgactcatgcaaatacttatagccattcctccacatgcaaagcagtttatttgaatggctataaaacttgcactccaatccatgtctttccattgt |
36633268 |
T |
|
| Q |
517 |
aattcgtcgggaaacaaagggttcaa |
542 |
Q |
| |
|
||||| || || |||||||||||||| |
|
|
| T |
36633269 |
aattcatcagggaacaaagggttcaa |
36633294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 36621993 - 36622252
Alignment:
| Q |
24 |
aggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagtt |
123 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||||||| ||||||| ||| || ||| |||| |||||||||||| || |
|
|
| T |
36621993 |
aggaaccattcttttgcgtagattcacaaccatgtaaaacgaagccgtctggaaatttaaccccattattgatacagcatgcttgtaaatccatgcaatt |
36622092 |
T |
|
| Q |
124 |
actgcttgtacacgtgatggaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacaca |
223 |
Q |
| |
|
|| |||| || |||| |||| || |||| |||||||||||| | ||||||||||| ||||||||||| | |||||||| |||||||||||| || |
|
|
| T |
36622093 |
acaacttgcacgcgtgtgggag---aaggcatggaactagaagttaccattgccttaagagacttgatcatcgcaggttgaaaaacaaaccttttaaact |
36622189 |
T |
|
| Q |
224 |
ccacattgttttttctcgttaacacaagttctgggaaaatagttaaatccctttgtggaaaaa |
286 |
Q |
| |
|
| |||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
36622190 |
caacattgttttctctctttaacacattttctgggaaaataggtaaatccctttgtggaaaaa |
36622252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 358 - 539
Target Start/End: Original strand, 36622306 - 36622487
Alignment:
| Q |
358 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
457 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
36622306 |
ttttggtagataatggcccaatcattcatgaagttgaaaatggttgcagcatcaccaattttgtgactaatgcaaatacttattaccattcctccgcatg |
36622405 |
T |
|
| Q |
458 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggtt |
539 |
Q |
| |
|
| || || || | ||||| ||||| ||| | | ||||||||||| ||||||||||| ||||| || || ||||||||||| |
|
|
| T |
36622406 |
caaaccaatttacttgaatggctataaaactcgctctccaatccatttctttccattgtaattcatcagggaacaaagggtt |
36622487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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