View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_high_12 (Length: 339)
Name: NF20630_high_12
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 14267315 - 14267012
Alignment:
| Q |
21 |
agttttgaaaccagcaagtcgcaaatgcaaaagaaaaaagaccacagtaatattataacgcgtaaatattaccgacttcgaattagaggtgtcttctctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14267315 |
agttttgaaaccagcaagtcgcaaatgcaaaagaaaaaagaccacagtaatattataacgcgtaaatattaccgacttcgaattagaggtgtcttctctc |
14267216 |
T |
|
| Q |
121 |
agaagttgcatcagaatttccagcttagtagttggttttgtttcagagaacatgtcatttaatgtgagtaaccctctacaataaggacagtttgtagggt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14267215 |
agaagttgcatcagaatttccagcttagtagttggttttgtttcagagaacatgtcatttaatgtgagtaactctctacaataaggacagtttgtagggt |
14267116 |
T |
|
| Q |
221 |
ctttggcagtagggtccatgacgagatcaaacgacgttttacctctggtgaaccattttctgatgcacttctggcnnnnnnncatgagtacatcctgtga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14267115 |
ctttggcagtagggtccatgacgagatcaagcgacgttttacctctggtgaaccattttctgatgcacttctggc-aaaaaacatgagtacatcctgtga |
14267017 |
T |
|
| Q |
321 |
ttact |
325 |
Q |
| |
|
||||| |
|
|
| T |
14267016 |
ttact |
14267012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 14274764 - 14274549
Alignment:
| Q |
14 |
aggacagagttttgaaaccagcaagtcgcaaatgcaaaagaaaaaagaccacagtaatattataacgcgtaaatattaccgacttcgaattag---aggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||||| |||||||| ||||||||||| |||| |||| |
|
|
| T |
14274764 |
aggacagagttttgaaaccagcaagtcgcaaatgcaaaagaaaaaagatcacaatacaagtataacgtgtaaatatgaccgacttcgacttagtagaggt |
14274665 |
T |
|
| Q |
111 |
gtcttctctcagaagttgcatcagaatttccagcttagtagttggttttgtttcagagaacatgtcatttaatgtgagtaaccctctacaataaggacag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14274664 |
gtcttctctcagaagttgcatcagaatttccaacttagtggttggttttgtttcagagaacatgtcatttaatgcgagtaaacctctacaataaggacag |
14274565 |
T |
|
| Q |
211 |
tttgtagggtctttgg |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14274564 |
gttgtagggtctttgg |
14274549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 14274537 - 14274477
Alignment:
| Q |
265 |
ctggtgaaccattttctgatgcacttctggcnnnnnnncatgagtacatcctgtgattactg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
14274537 |
ctggtgaaccattttctgatgcacttctggc-agaaaacgtgagtacatcctgtgattactg |
14274477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University