View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_high_14 (Length: 327)
Name: NF20630_high_14
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_high_14 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 24207794 - 24207936
Alignment:
| Q |
185 |
catacaaaatcacgagttttaagtttagtctctaaattttaattgaaaatttagacctccataaaatttagttcttttaggctatagatttaaataagtt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24207794 |
catacaaaatcacgagttttaagtttagtctctaaattttaattgaaaatttagacctcattaaaatttagttcttttagcctatagatttaaataagtt |
24207893 |
T |
|
| Q |
285 |
tgcctgtctccggagaggtctcttggttaacggtgtctctcat |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24207894 |
tgcctgtctccggagaggtctcttgattaacggtgtctctcat |
24207936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 24207634 - 24207730
Alignment:
| Q |
25 |
gtgttccataaagtatttcatcatcacaaagagaatgaggtcaaggacacagaaatttcagaacttctacgggatatccaaatccaattacataagg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24207634 |
gtgttccataaagtatttcatcatcacaaagagaatgaggtcaaggacacagaaatttcagaacttctacgggatatccaaatccaattaaataagg |
24207730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University