View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_high_4 (Length: 424)
Name: NF20630_high_4
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 14094589 - 14094718
Alignment:
| Q |
295 |
aaaatgtttctttcaagaaaacattgtatgaatgttttaaagagaaataaaattatatggtgttacgaactaaattaaaatacaagtaataataatgcaa |
394 |
Q |
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| T |
14094589 |
aaaacgtttctttctagaaaacattgtaagaatgttttaaagagaaataaaattatatggtgttacgaactaaattaaaatacaagtaataataatgcaa |
14094688 |
T |
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| Q |
395 |
gtcaatacaatattgcagagtgagggttgc |
424 |
Q |
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| T |
14094689 |
gtcaatacaatattgcagagtgagggttgc |
14094718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 110 - 270
Target Start/End: Original strand, 14094365 - 14094527
Alignment:
| Q |
110 |
aagaactcagaaagattaagagctttaagatggaacctatgacctaattacaannnnnnnnnnnnnn--aaatcttccaaacaaactttttattcaaaat |
207 |
Q |
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| T |
14094365 |
aagaactcagaaagattaagagctttaagatggaacctatgacctaattacaatttttttttttttttgaaatcttccgaacaaactttttattcaaaat |
14094464 |
T |
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| Q |
208 |
aatacttttttagggagtatatcactcaattagtttgtaacttaagtttttacacttcctaac |
270 |
Q |
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| T |
14094465 |
aatacttttttagggagtatatcactcaattagtttgtaacttaagtttttacacttcctaac |
14094527 |
T |
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