View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_high_8 (Length: 401)
Name: NF20630_high_8
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 37317633 - 37317982
Alignment:
| Q |
32 |
accttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317633 |
accttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaa |
37317732 |
T |
|
| Q |
132 |
gaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagag |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317733 |
gaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagag |
37317832 |
T |
|
| Q |
232 |
attcgtacaagccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttgagagc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317833 |
attcgtacaagccacttgatccaatttggatattggacaaaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttgagagc |
37317932 |
T |
|
| Q |
332 |
taatgattgtgttttggatgattatgctgagaatgatcctgtctttggcg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317933 |
taatgattgtgttttggatgattatgctgagaatgatcctgtctttggcg |
37317982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 54 - 327
Target Start/End: Original strand, 37242505 - 37242778
Alignment:
| Q |
54 |
aacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttc |
153 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |||| | | ||||||| | ||||||||| |||| || | |
|
|
| T |
37242505 |
aacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggaaaatttaaagcttatggaaaagcacaagcatcgagccctcc |
37242604 |
T |
|
| Q |
154 |
ttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagagattcgtacaagccacttgatcc |
253 |
Q |
| |
|
||||||| |||| |||||||| |||||| ||||||||||||||||| | ||||||||| | |||||||| ||| || || ||| |||||||||| |
|
|
| T |
37242605 |
ttcattttttaaagaggtgtggaaagcccgttgagttgttattccaacgcttgaatcaagtggctaaagagttgaaagactcatataagtcacttgatcc |
37242704 |
T |
|
| Q |
254 |
aatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttga |
327 |
Q |
| |
|
|||||||| | ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242705 |
aatttggacaaacaacacaccaaaattcattgaaatgatgattcttgatggttgttttattttggagattttga |
37242778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 63 - 325
Target Start/End: Original strand, 37304594 - 37304858
Alignment:
| Q |
63 |
gcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctat--ggaagaacacaagcatagagctcttcttcattt |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| | ||| |||||| |||||||||||||| ||| ||| ||| |
|
|
| T |
37304594 |
gcctacaaaccacaagcaatttcatttggtccttaacattatggagaggagaatttacagtttatatggaagagcacaagcatagagcccttgttcgttt |
37304693 |
T |
|
| Q |
161 |
cttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagagattcgtacaagccacttgatccaatttgg |
260 |
Q |
| |
|
||||| ||| || |||| || |||||||| ||||| ||| || |||||||||| |||||| ||||| ||||| || |||||||||||||||||| |
|
|
| T |
37304694 |
cttaaagagatgccaaaaacccattgagttcttatttcaatgtatggatcaagtggccaaagagttaagagactcgtataaaccacttgatccaatttgg |
37304793 |
T |
|
| Q |
261 |
atattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagatttt |
325 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37304794 |
ataaatgatacaccaaagttccttcaaatgatgattcttgatggttgttttattttggagatttt |
37304858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 330
Target Start/End: Original strand, 37273231 - 37273484
Alignment:
| Q |
77 |
agcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaa |
176 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||| ||||| | | |||||||||| ||||||||| ||||||||||||||||| ||| |||||||| | |
|
|
| T |
37273231 |
agcaatttcatttggaccttaccattatgggaaggagcatttaaagcctatggaagagcacaagcatcgagctcttcttcatttcctaaagaggtgtgga |
37273330 |
T |
|
| Q |
177 |
aagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagagattcgtacaagccacttgatccaatttggatattgggcacaccaa |
276 |
Q |
| |
|
|| | || | | | ||||||||||| | ||| |||||| || |||||||||||| ||||| ||| | | |||| ||||||||||| | |||| ||| |
|
|
| T |
37273331 |
gagtcctttaaatcgatattccaaaaattggataaagtggctcaagagttgagagactcgtataagtcgcatgattcaatttggataaatgacacatcaa |
37273430 |
T |
|
| Q |
277 |
agtttgttcaaatgatgattcttgatggttgttttattttggagattttgagag |
330 |
Q |
| |
|
| || |||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
37273431 |
aattcattcaaatgatgattctcgatggttgtttcattttggaatttttgagag |
37273484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 37964752 - 37964893
Alignment:
| Q |
54 |
aacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctcttc |
153 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||| ||| |||||||||| |||| | | ||||||||| ||||| || |||| ||| |
|
|
| T |
37964752 |
aacaaaaaggcctacaaaccacaagtaatttcctttggtccttaccataatggggaggagaatttaaagcttatggaagagcacaaatatcgagcgcttg |
37964851 |
T |
|
| Q |
154 |
ttcatttcttaaggaggtgtgaaaagcctattgagttgttat |
195 |
Q |
| |
|
||| |||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
37964852 |
ttcgtttcttaaagaggtgtgaaaagtccattgagttgttat |
37964893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37317937 - 37317897
Alignment:
| Q |
1 |
cattagctctcaaaatctccacaatagaacaaccttcaaga |
41 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
37317937 |
cattagctctcaaaatctccaaaataaaacaaccatcaaga |
37317897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 16573425 - 16573315
Alignment:
| Q |
51 |
ctaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctc |
150 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| ||||||||||||| | |
|
|
| T |
16573425 |
ctaaacaaaaatgtctacaaaccacaaaaaatttcgtttggtccttatcatcatggtgaggagcatttgatggcaatggaagagtacaagcatagagccc |
16573326 |
T |
|
| Q |
151 |
ttcttcatttc |
161 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16573325 |
ttattcatttc |
16573315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 16573248 - 16573161
Alignment:
| Q |
242 |
gccacttgatccaatttggatattgggcacaccaaagtttgttcaaatgatgattcttgatggttgttttattttggagattttgaga |
329 |
Q |
| |
|
|||||||||||||||||||||| | | || ||||||| |||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
16573248 |
gccacttgatccaatttggatacttgacaagtcaaagttccttcaaatgatgattcttgatggttgtttcatcttggagattgtgaga |
16573161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University