View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_10 (Length: 366)
Name: NF20630_low_10
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 37317608 - 37317252
Alignment:
| Q |
1 |
catagttccatctcatcagatgttgaaggaccattgctctttatttcgttattgatttgatccacccaattcatttcaaattccatgtattttcctaatg |
100 |
Q |
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| T |
37317608 |
catagttccatctcatcagatgttgaaggaccattgctctttatttcgttattgatttgatccacccaattcatttcaaattccatgtattttcctaatg |
37317509 |
T |
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| Q |
101 |
ccttatagattaattagtcatcatatttgtatactagctagataggctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataa |
200 |
Q |
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| T |
37317508 |
ccttatagattaattagtcatcatatttgtatactagctagataggctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataa |
37317409 |
T |
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| Q |
201 |
aatattcacatcataagctgttagactatcaatgtctaattggaatcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacatttt |
300 |
Q |
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| T |
37317408 |
aatattcacatcataagctgttagactatcaatgtctaattggaatcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacatttt |
37317309 |
T |
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| Q |
301 |
ttatatatcttcaattccttacttccaaacttcttgttgcagtacccctatgcttct |
357 |
Q |
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| T |
37317308 |
ttatatatcttcaattccttacttccaaacttcttgttgcagtacccctattcttct |
37317252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 37242256 - 37242185
Alignment:
| Q |
185 |
ttgaaagcaaaaataaaatattcacatcataagctgttagactatcaatgtctaattggaatcttcttttta |
256 |
Q |
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| T |
37242256 |
ttgaaagcaaaactaaaatattcaccccattacctgtaaaactattaatgtctaattggaatcttctcttta |
37242185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 37964701 - 37964622
Alignment:
| Q |
5 |
gttccatctcatcagatgttgaaggaccattgctctttatttcgttattgatttgatccacccaattcatttcaaattccatg |
87 |
Q |
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||||| ||||||||| | |||||||||||||| |||| || || |||||||| ||||| |||||||||||| ||||||||| |
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| T |
37964701 |
gttccttctcatcagctattgaaggaccattgttcttgatctc---attgattttatccatccaattcatttctaattccatg |
37964622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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