View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_11 (Length: 346)
Name: NF20630_low_11
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 31300436 - 31300750
Alignment:
| Q |
13 |
aatatcacatttgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgataatgtgttaggtggtttcagacaagatagtctaagt |
112 |
Q |
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| T |
31300436 |
aatatcacatttgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgatactgtgttaggtggtttcagataagatagtctgagt |
31300535 |
T |
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| Q |
113 |
tatggaatagattattttgaggagaaagacaaaaggatggtggccattttaagtggctccctataataaggatacaatgaatgtttcgtgagataaacac |
212 |
Q |
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| T |
31300536 |
tatggaatagattattttgaggagaaagacaaaaggatggtggccatctgaagtggctccctataataaggatacaatgaatgtttcgtgagataaacac |
31300635 |
T |
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| Q |
213 |
acataaaagtcacctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacattgttcttaggtgcgttaaatcctttcaaa |
312 |
Q |
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| T |
31300636 |
acataaaagtcacctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacactgttcttaggtgcgttaaatcctttcaaa |
31300735 |
T |
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| Q |
313 |
aaggaacatcatgtg |
327 |
Q |
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| T |
31300736 |
aaggaacatcatgtg |
31300750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 53388975 - 53388920
Alignment:
| Q |
227 |
tccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgaca |
282 |
Q |
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| T |
53388975 |
tccctctatgtcgacctccatgttttatgaagcttcccttgtggctgaagttgaca |
53388920 |
T |
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