View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_low_15 (Length: 311)
Name: NF20630_low_15
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_15 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 26250832 - 26251111
Alignment:
| Q |
12 |
atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26250832 |
atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtgcaatttattttg |
26250931 |
T |
|
| Q |
112 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26250932 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccgtcagcaactttg |
26251031 |
T |
|
| Q |
212 |
tgattgggaattggaaaacaatgctatgaaggccatttttgaaccaatgtatgaatcagcggaaagaagctatgggtcac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26251032 |
tgattgggaattggaaaacaatgctatgaaggccatttttgaaccaatgtatgaatcagcagaaagaagctatgggtcac |
26251111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 26242384 - 26242663
Alignment:
| Q |
12 |
atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttg |
111 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26242384 |
atgatgtatccttggactgtggaatcagctgcaaaactaaatattccaaggattcacttttgcagctcaagctacttctccgactgtggaatttattttg |
26242483 |
T |
|
| Q |
112 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
26242484 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtcttcaactttg |
26242583 |
T |
|
| Q |
212 |
tgattgggaattggaaaacaatgctatgaaggccatttttgaaccaatgtatgaatcagcggaaagaagctatgggtcac |
291 |
Q |
| |
|
||| |||||| ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26242584 |
tgactgggaaagggaaaccaatgttatgacggccatttttgaaccaaattatgtatcagcggaaagaagctatgggtcac |
26242663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 26297432 - 26297711
Alignment:
| Q |
12 |
atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttg |
111 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
26297432 |
atgaaatacccttggactgtggaatcagctgcaaaactaaacattccaaggattgacttttacagctcaagctacttctcctattgtgcaatttattttg |
26297531 |
T |
|
| Q |
112 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||| |
|
|
| T |
26297532 |
ttagaaaatataaaccccattataatttagtttctgaaacacagaaatttacaattccttgtttacctcataccattgagatgacacgtctgcagcttca |
26297631 |
T |
|
| Q |
212 |
tgattgggaattggaaaacaatgctatgaaggccatttttgaaccaatgtatgaatcagcggaaagaagctatgggtcac |
291 |
Q |
| |
|
| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26297632 |
taattgggaaagggaaaacaacgctatgacggccatttttgaaccaatgtatgaatcagcggaaagaagctatgggtcac |
26297711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26223525 - 26223703
Alignment:
| Q |
18 |
tatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaa |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| || ||||||||||||| |
|
|
| T |
26223525 |
tatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctcaagctacttctccaattgtgcaagctattttgttagaa |
26223624 |
T |
|
| Q |
118 |
aatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgac |
196 |
Q |
| |
|
| |||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
26223625 |
agtatagacctcatgataatttagtttctgatacacagaaatttactgttccttgtttgcctcatacaattgagatgac |
26223703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26203887 - 26204065
Alignment:
| Q |
18 |
tatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaa |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| | ||||||||||||| |
|
|
| T |
26203887 |
tatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctcaagctacttctccaattgtgcgagctattttgttagaa |
26203986 |
T |
|
| Q |
118 |
aatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgac |
196 |
Q |
| |
|
| |||| ||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
26203987 |
agtatagacctcatgataatttagtttctgatacacagaaatttaccgttccttgtttgcctcatacaattgagatgac |
26204065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 26191252 - 26191526
Alignment:
| Q |
12 |
atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttg |
111 |
Q |
| |
|
|||| |||||||||||| || ||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||| || ||||| |
|
|
| T |
26191252 |
atgatgtatccttggacagtggaagcagctgcaaaactaaacattccaaggattcacttttatagctcaagttacttctccagctgtgcctttcatttta |
26191351 |
T |
|
| Q |
112 |
ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttg |
211 |
Q |
| |
|
| | ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| |||||| || |
|
|
| T |
26191352 |
tcatgaaatataggcctcatgataatttagtttctgatacacagaaatttactattcctagttttcctcataccattgagatgacccctctgcagattcc |
26191451 |
T |
|
| Q |
212 |
tgattgggaattggaaaacaatgctatgaaggccatttttgaaccaatgtatgaatcagcggaaagaagctatgg |
286 |
Q |
| |
|
||||||| | |||||| ||| || | ||| |||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
26191452 |
tgattggttaagggaaaagaatcctgccacagcctattttgaaccaatttatgaatcagaggaaaaaagctatgg |
26191526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 26179191 - 26179276
Alignment:
| Q |
133 |
ataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttgtgattgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
26179191 |
ataatttagtttctgatacacagaaatttacaattccttgttttcctcatacaattgagatgactcctctgcaacttcctgattgg |
26179276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 26128562 - 26128747
Alignment:
| Q |
20 |
tccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaaaa |
119 |
Q |
| |
|
||||||||| || ||| |||||||||||||| |||||||| ||| | | | ||||||||||||||||||| | |||| | ||||| | | || |
|
|
| T |
26128562 |
tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcattataacagctcaagctacttctccaactgtgcagaacattttatcatgaag |
26128661 |
T |
|
| Q |
120 |
tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgca |
205 |
Q |
| |
|
|||| ||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| |
|
|
| T |
26128662 |
tatagaccaaatgataatttagtttctgatacacagaaatttacaattcctggtttgcctcatacaattgagatgactcctctgca |
26128747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 19103702 - 19103501
Alignment:
| Q |
17 |
gtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttaga |
116 |
Q |
| |
|
|||| ||||||| || ||| |||||||||||||| |||||||| ||| ||| || ||||||||||||||||||| | |||| | ||||| | | |
|
|
| T |
19103702 |
gtatgcttggaccgtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgttttccattttatcatg |
19103603 |
T |
|
| Q |
117 |
aaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttgtgatt |
216 |
Q |
| |
|
|| |||| ||| ||| ||||||||||||||||||| ||||||||||| ||||| |||| |||||||| ||||||||||| | |||||| ||| ||||| |
|
|
| T |
19103602 |
aagtatagacctcataataatttagtttctgatacgcagaaatttacggttcctggtttgcctcataccattgagatgactcctctgcagcttcctgatt |
19103503 |
T |
|
| Q |
217 |
gg |
218 |
Q |
| |
|
|| |
|
|
| T |
19103502 |
gg |
19103501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 26155298 - 26155383
Alignment:
| Q |
120 |
tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgca |
205 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||| | |||||| |
|
|
| T |
26155298 |
tatagacctcatgataatttagtttctgatacacacaaatttacaattcctggtttgcctcatacaattgaaatgactcctctgca |
26155383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26087776 - 26087952
Alignment:
| Q |
20 |
tccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaaaa |
119 |
Q |
| |
|
||||||||| || ||| |||||||||||||| |||||||| ||| ||| || ||||||||||||||||||| | |||| | ||||| | | || |
|
|
| T |
26087776 |
tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgcagaacattttatcatgaag |
26087875 |
T |
|
| Q |
120 |
tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgac |
196 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||||||||||||||||||| ||||| | || |||||| ||||||||||||| |
|
|
| T |
26087876 |
tatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac |
26087952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26111564 - 26111740
Alignment:
| Q |
20 |
tccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaaaa |
119 |
Q |
| |
|
||||||||| || ||| |||||||||||||| |||||||| ||| ||| || ||||||||||||||||||| | |||| | ||||| | | || |
|
|
| T |
26111564 |
tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgcagaacattttatcatgaag |
26111663 |
T |
|
| Q |
120 |
tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgac |
196 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||||||||||||||||||| ||||| | || |||||| ||||||||||||| |
|
|
| T |
26111664 |
tatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac |
26111740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 26301803 - 26301878
Alignment:
| Q |
17 |
gtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctcc |
92 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||| |||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
26301803 |
gtatccttggacagttgaatcagcttcaaaactgaacattccgaggatgtacttttacagctcaagctacttctcc |
26301878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 26301904 - 26301966
Alignment:
| Q |
133 |
ataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatga |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| |
|
|
| T |
26301904 |
ataatttggtttctgatacacagaaatttactattgctggtttgcctcatacaattgagatga |
26301966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 26207428 - 26207501
Alignment:
| Q |
18 |
tatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctc |
91 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| |||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
26207428 |
tatccatggacagtggaatcagctgcaaaactcggcattccaaggctttactattacagctcaagctacttctc |
26207501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 44903245 - 44903444
Alignment:
| Q |
20 |
tccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtggaatttattttgttagaaaa |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||| |||| | || ||||||||||||||||||| | |||| | ||||||||||||||| |
|
|
| T |
44903245 |
tccttggactgtggaatcagctgcaaaactaagcattcctaggctttattattacagctcaagctacttctccaattgtgcatgttattttgttagaaag |
44903344 |
T |
|
| Q |
120 |
tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccatctgcaactttgtgattggg |
219 |
Q |
| |
|
|||| ||| ||| || |||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| || |||||| ||| | ||||||| |
|
|
| T |
44903345 |
tatagacctcatgatcatttagtttctgatacacagaagtttactattccttgtttgcctcataccattgagatgagccgtctgcagcttcgcgattggg |
44903444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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