View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_16 (Length: 301)
Name: NF20630_low_16
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 26634097 - 26633852
Alignment:
| Q |
1 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcatttta |
100 |
Q |
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| T |
26634097 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtttaattttacctcatttta |
26633998 |
T |
|
| Q |
101 |
ttttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggcattaccatttccagcaaatggattgtc |
200 |
Q |
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| T |
26633997 |
ttttgttcaatcataagttagtaggaccacttagggtagttga-ccgtcggggtcagataacttgaagatggcattaccatttccagcaaatggattgtc |
26633899 |
T |
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| Q |
201 |
tttgaccattcaaatcttattaaaccatatattaatcataatcttat |
247 |
Q |
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| T |
26633898 |
tttgaccatgcaaatctaattaaaccttataataatcataatcttat |
26633852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26611447 - 26611204
Alignment:
| Q |
1 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcatttta |
100 |
Q |
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| T |
26611447 |
atgaccccatttgtatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgccactgaaccttagattaattttacctcatttta |
26611348 |
T |
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| Q |
101 |
ttttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggcattaccatttccagcaaatggattgtc |
200 |
Q |
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| T |
26611347 |
ttttgttcaatcata-gttagtaggacaacttatggtagttgatccgtcagggtcaaataacttgaagatggcattaccatttccagcaaatggattgtc |
26611249 |
T |
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| Q |
201 |
tttgaccattcaaatcttattaaaccatatattaatcataatctt |
245 |
Q |
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| T |
26611248 |
tttgaccattcaaatcttattaaaccctatattaatcataatctt |
26611204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26626639 - 26626537
Alignment:
| Q |
1 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
26626639 |
atgaccccatttgcatttattgtaactcccaattcaaagtatatatgtggtaccacaattgggatgcc-ctgaaccttagtttaattttacctcatttta |
26626541 |
T |
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| Q |
101 |
tttt |
104 |
Q |
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|||| |
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|
| T |
26626540 |
tttt |
26626537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 26626176 - 26626083
Alignment:
| Q |
159 |
taacttgaagatggcattaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaatcataatcttattaggg |
252 |
Q |
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| T |
26626176 |
taacttgaagatggcattaccattaccagcaaatagattgtctttgaccattcaaatcttactaaaccatatattaagcataatcttattaggg |
26626083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 26611184 - 26611129
Alignment:
| Q |
229 |
atattaatcataatcttatta-gggtgcaattgttcttagtcgcattggtagttgc |
283 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
26611184 |
atattaatcataatcttattaagggtgcaattgttcttagtcgcatttgtagttgc |
26611129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 26626247 - 26626195
Alignment:
| Q |
95 |
attttattttgttctatcataagttagtgggactacttagggtagttgatccgt |
148 |
Q |
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|||||||||| ||| |||||| |||||| |||| |||||||||||||||||||| |
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| T |
26626247 |
attttatttttttcaatcata-gttagtaggaccacttagggtagttgatccgt |
26626195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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