View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_18 (Length: 272)
Name: NF20630_low_18
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_18 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 26634500 - 26634240
Alignment:
| Q |
7 |
tccaagaatattgggggcaaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgt |
106 |
Q |
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| T |
26634500 |
tccaagaatattgggggcaaagagtttattccaagattcaa-----tggaacaaagttaatagattattgctactttataccaaggtctcttttctttgt |
26634406 |
T |
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| Q |
107 |
ctttggacctatattatatagaacggtaacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagt |
206 |
Q |
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| T |
26634405 |
ctttggacctatattatatagaacggtaacagattcgtggctcttgttttgatgatagatgatgagcttcggctcatactcttgtgtgttgtttggaagt |
26634306 |
T |
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| Q |
207 |
ctaatgtccaaaccatccaagttggtaaatgaatacgatcccagctccataaaattcgagagatta |
272 |
Q |
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| T |
26634305 |
ctaatgtccaaaccatccaagttggtaaatgaatacggtcccagctccataagattcgagagatta |
26634240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 26627046 - 26626836
Alignment:
| Q |
34 |
attccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
133 |
Q |
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| T |
26627046 |
attccaagattcaactgaatggaacaaagttaatacattattactaatttataccaaggtttcttttctttgtctttggacctatattatatagaacggt |
26626947 |
T |
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| Q |
134 |
aacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagtctaatgtccaaaccatccaagttggta |
233 |
Q |
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| T |
26626946 |
aacgaatttgtagctctagtttcaatgatagatgatgaccttcggctcatactcttgtgtattttttgggagtctaatgtccaaaccatccaagttcgta |
26626847 |
T |
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| Q |
234 |
aatgaatacga |
244 |
Q |
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| T |
26626846 |
aatgcatacga |
26626836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 26611900 - 26611736
Alignment:
| Q |
7 |
tccaagaatattgggggcaaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgt |
106 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |
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| T |
26611900 |
tccaagaatattggggacaaagagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtttattttctttgt |
26611801 |
T |
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| Q |
107 |
ctttggacctat----attatatagaacggtaacagattt-gtggctcttgttttgatgatagat |
166 |
Q |
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| T |
26611800 |
gtttggacctgtgttaattatatagaacggtaagggatttggtagctcttgttttgatgacagat |
26611736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 26646477 - 26646385
Alignment:
| Q |
40 |
agattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
133 |
Q |
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| T |
26646477 |
agattccactgaatggaacaaagtttatagattattgctac-tagtgccaagattttttttctttgtttttggatctatataatatagaacggt |
26646385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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