View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20630_low_19 (Length: 270)

Name: NF20630_low_19
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20630_low_19
NF20630_low_19
[»] chr8 (8 HSPs)
chr8 (232-270)||(32905343-32905381)
chr8 (232-270)||(3075329-3075367)
chr8 (232-270)||(14094166-14094204)
chr8 (232-270)||(14880204-14880242)
chr8 (232-270)||(32904235-32904273)
chr8 (232-270)||(41312396-41312434)
chr8 (233-270)||(13439443-13439480)
chr8 (232-269)||(44284366-44284403)
[»] chr7 (7 HSPs)
chr7 (232-270)||(31221471-31221509)
chr7 (232-270)||(5228654-5228692)
chr7 (232-270)||(8535449-8535487)
chr7 (232-270)||(11639917-11639955)
chr7 (232-270)||(27619649-27619687)
chr7 (232-270)||(38790093-38790131)
chr7 (232-270)||(40401567-40401605)
[»] chr6 (6 HSPs)
chr6 (232-270)||(31881861-31881899)
chr6 (232-270)||(7127673-7127711)
chr6 (232-270)||(12026213-12026251)
chr6 (232-270)||(14313865-14313903)
chr6 (232-270)||(21801959-21801997)
chr6 (232-270)||(34794538-34794576)
[»] chr5 (10 HSPs)
chr5 (232-270)||(20183381-20183419)
chr5 (232-269)||(15175887-15175924)
chr5 (199-234)||(1406257-1406292)
chr5 (232-270)||(9017668-9017706)
chr5 (232-270)||(19408560-19408598)
chr5 (232-270)||(27979252-27979290)
chr5 (232-270)||(31476980-31477018)
chr5 (232-270)||(31601559-31601597)
chr5 (232-270)||(36737464-36737502)
chr5 (233-270)||(20184030-20184067)
[»] chr1 (8 HSPs)
chr1 (232-270)||(1116454-1116492)
chr1 (232-270)||(43320593-43320631)
chr1 (232-270)||(11916471-11916509)
chr1 (232-270)||(16536392-16536430)
chr1 (232-270)||(27930785-27930823)
chr1 (232-270)||(45737325-45737363)
chr1 (232-270)||(47233080-47233118)
chr1 (232-269)||(27931321-27931358)
[»] scaffold0695 (1 HSPs)
scaffold0695 (232-270)||(2244-2282)
[»] scaffold0361 (1 HSPs)
scaffold0361 (232-270)||(16506-16544)
[»] scaffold0289 (1 HSPs)
scaffold0289 (232-270)||(4063-4101)
[»] chr4 (11 HSPs)
chr4 (232-270)||(6232371-6232409)
chr4 (232-270)||(7797629-7797667)
chr4 (232-270)||(17722771-17722809)
chr4 (232-270)||(19314029-19314067)
chr4 (232-270)||(23722067-23722105)
chr4 (232-270)||(35667299-35667337)
chr4 (232-270)||(35667772-35667810)
chr4 (232-270)||(37423164-37423202)
chr4 (232-270)||(55068864-55068902)
chr4 (232-269)||(20545034-20545071)
chr4 (242-270)||(6232340-6232368)
[»] chr3 (11 HSPs)
chr3 (232-270)||(1262420-1262458)
chr3 (232-270)||(1263074-1263112)
chr3 (232-270)||(2756622-2756660)
chr3 (232-270)||(11345374-11345412)
chr3 (232-270)||(13625920-13625958)
chr3 (232-270)||(18364653-18364691)
chr3 (232-270)||(18365296-18365334)
chr3 (232-270)||(44500058-44500096)
chr3 (232-270)||(48224152-48224190)
chr3 (232-270)||(54403582-54403620)
chr3 (232-268)||(54605787-54605823)
[»] chr2 (7 HSPs)
chr2 (232-270)||(34247403-34247441)
chr2 (232-270)||(37009015-37009053)
chr2 (232-270)||(40947452-40947490)
chr2 (232-268)||(8313678-8313714)
chr2 (232-268)||(10357136-10357172)
chr2 (201-233)||(12353414-12353446)
chr2 (242-270)||(17829714-17829742)
[»] scaffold0533 (1 HSPs)
scaffold0533 (237-270)||(10131-10164)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 32905343 - 32905381
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  32905343 ttaacataaaaagggaggagagtgtaattcaagcatctt 32905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 3075367 - 3075329
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  3075367 ttaacataagaggggaggggagtgtaattcaagcatctt 3075329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 14094166 - 14094204
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  14094166 ttaacataagaggggaggggagtgtaattcaagcatctt 14094204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 14880204 - 14880242
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  14880204 ttaacataagaggggaggggagtgtaattcaagcatctt 14880242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 32904235 - 32904273
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  32904235 ttaacataagaggggaggggagtgtaattcaagcatctt 32904273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 41312396 - 41312434
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  41312396 ttaacataagaggggaggggagtgtaattcaagcatctt 41312434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 13439480 - 13439443
Alignment:
Q  233 taacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    |||||||| | |||||||||||||||||||||||||||    
T  13439480 taacataagaggggaggggagtgtaattcaagcatctt 13439443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 44284366 - 44284403
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatct 269  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  44284366 ttaacataagaggggaggggagtgtaattcaagcatct 44284403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 31221471 - 31221509
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31221471 ttaacataagaagggaggggagtgtaattcaagcatctt 31221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 5228654 - 5228692
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  5228654 ttaacataaaaggggaggagagtgtaattcaagcatctt 5228692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 8535449 - 8535487
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  8535449 ttaacataaaaggggaggggagtgtaattcaaacatctt 8535487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 11639955 - 11639917
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  11639955 ttaacataagaggggaggggagtgtaattcaagcatctt 11639917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 27619649 - 27619687
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  27619649 ttaacataagaggggaggggagtgtaattcaagcatctt 27619687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 38790131 - 38790093
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  38790131 ttaacataagaggggaggggagtgtaattcaagcatctt 38790093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 40401567 - 40401605
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  40401567 ttaacataagaggggaggggagtgtaattcaagcatctt 40401605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 31881899 - 31881861
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  31881899 ttaacataaaaggggaggggagtgtaattcaagcatctt 31881861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 7127673 - 7127711
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  7127673 ttaacttaaaaggggaggggagtgtaattcaagcatctt 7127711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 12026213 - 12026251
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  12026213 ttaacataagaggggaggggagtgtaattcaagcatctt 12026251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 14313865 - 14313903
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  14313865 ttaacataagaggggaggggagtgtaattcaagcatctt 14313903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 21801997 - 21801959
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  21801997 ttaacataagaatggaggggagtgtaattcaagcatctt 21801959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 34794538 - 34794576
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  34794538 ttaacataagaggggaggggagtgtaattcaagcatctt 34794576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 20183419 - 20183381
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  20183419 ttaacataagaagggaggggagtgtaattcaagcatctt 20183381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 15175887 - 15175924
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatct 269  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  15175887 ttaacataagaagggaggggagtgtaattcaagcatct 15175924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 1406292 - 1406257
Alignment:
Q  199 taagagaagtttgaattacactctcatctcctctta 234  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1406292 taagagaagcttgaattacactctcatctcctctta 1406257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 9017706 - 9017668
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  9017706 ttaacataagaggggaggggagtgtaattcaagcatctt 9017668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 19408598 - 19408560
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  19408598 ttaacataagaggggaggggagtgtaattcaagcatctt 19408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 27979290 - 27979252
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  27979290 ttaacataagaggggaggggagtgtaattcaagcatctt 27979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 31476980 - 31477018
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  31476980 ttaacataagaggggaggggagtgtaattcaagcatctt 31477018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 31601559 - 31601597
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  31601559 ttaatataaaaggggaggggagtgtaattcaagcatctt 31601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 36737464 - 36737502
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  36737464 ttaacataagaggggaggggagtgtaattcaagcatctt 36737502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 20184030 - 20184067
Alignment:
Q  233 taacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    |||||||| | |||||||||||||||||||||||||||    
T  20184030 taacataagaggggaggggagtgtaattcaagcatctt 20184067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 1116492 - 1116454
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  1116492 ttaacataaaaggggaggggagtgtaattcaagcatctt 1116454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 43320593 - 43320631
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43320593 ttaacataaaaggggaggggagtgtaattcaagcatctt 43320631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 11916509 - 11916471
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  11916509 ttaacataataaaggaggggagtgtaattcaagcatctt 11916471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 16536430 - 16536392
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  16536430 ttaacataagaggggaggggagtgtaattcaagcatctt 16536392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 27930823 - 27930785
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  27930823 ttaacataagaggggaggggagtgtaattcaagcatctt 27930785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 45737363 - 45737325
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  45737363 ttaacataagaggggaggggagtgtaattcaagcatctt 45737325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 47233118 - 47233080
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  47233118 ttaacataagaagggaggggagtgtaattcaagtatctt 47233080  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 27931321 - 27931358
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatct 269  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  27931321 ttaacataagaggggaggggagtgtaattcaagcatct 27931358  T

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Target: scaffold0695 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 2282 - 2244
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  2282 ttaacataagaggggaggggagtgtaattcaagcatctt 2244  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 16544 - 16506
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  16544 ttaacataagatgggaggggagtgtaattcaagcatctt 16506  T

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Target: scaffold0289 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 4063 - 4101
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  4063 ttaacataagatgggaggggagtgtaattcaagcatctt 4101  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 6232409 - 6232371
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  6232409 ttaacataagaggggaggggagtgtaattcaagcatctt 6232371  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 7797629 - 7797667
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  7797629 ttaacataagaagggaggggaatgtaattcaagcatctt 7797667  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 17722809 - 17722771
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  17722809 ttaacataagaggggaggggagtgtaattcaagcatctt 17722771  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 19314029 - 19314067
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  19314029 ttaacataagacgggaggggagtgtaattcaagcatctt 19314067  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 23722067 - 23722105
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  23722067 ttaacataagaggggaggggagtgtaattcaagcatctt 23722105  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 35667299 - 35667337
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35667299 ttaacataagaggggaggggagtgtaattcaagcatctt 35667337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 35667772 - 35667810
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35667772 ttaacataagaggggaggggagtgtaattcaagcatctt 35667810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 37423202 - 37423164
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  37423202 ttaacataagaatggaggggagtgtaattcaagcatctt 37423164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 55068902 - 55068864
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  55068902 ttaacataagaggggaggggagtgtaattcaagcatctt 55068864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 20545034 - 20545071
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatct 269  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  20545034 ttaacataagaggggaggggagtgtaattcaagcatct 20545071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 6232368 - 6232340
Alignment:
Q  242 aagggaggggagtgtaattcaagcatctt 270  Q
    |||||||||||||||||||||||||||||    
T  6232368 aagggaggggagtgtaattcaagcatctt 6232340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 1262458 - 1262420
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  1262458 ttaacataagaggggaggggagtgtaattcaagcatctt 1262420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 1263074 - 1263112
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  1263074 ttaacataagaggggaggggagtgtaattcaagcatctt 1263112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 2756622 - 2756660
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  2756622 ttaacataagaggggaggggagtgtaattcaagcatctt 2756660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 11345374 - 11345412
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  11345374 ttaacataagaggggaggggagtgtaattcaagcatctt 11345412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 13625920 - 13625958
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  13625920 ttaacataagatgggaggggagtgtaattcaagcatctt 13625958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 18364691 - 18364653
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  18364691 ttaacataagaggggaggggagtgtaattcaagcatctt 18364653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 18365296 - 18365334
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  18365296 ttaacataagaggggaggggagtgtaattcaagcatctt 18365334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 44500058 - 44500096
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  44500058 ttaacataagaggggaggggagtgtaattcaagcatctt 44500096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 48224152 - 48224190
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  48224152 ttaacataagatgggaggggagtgtaattcaagcatctt 48224190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 54403620 - 54403582
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  54403620 ttaacataagaggggaggggagtgtaattcaagcatctt 54403582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 54605823 - 54605787
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatc 268  Q
    ||||||||| | |||||||||||||||||||||||||    
T  54605823 ttaacataagaggggaggggagtgtaattcaagcatc 54605787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 34247441 - 34247403
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  34247441 ttaacttaagaagggaggggagtgtaattcaagcatctt 34247403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 37009053 - 37009015
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  37009053 ttaacataagaggggaggggagtgtaattcaagcatctt 37009015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 40947490 - 40947452
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatctt 270  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  40947490 ttaacataaaaggggaggagagtgtaattcaagcatctt 40947452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 8313714 - 8313678
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatc 268  Q
    ||||||||| | |||||||||||||||||||||||||    
T  8313714 ttaacataagaggggaggggagtgtaattcaagcatc 8313678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 10357136 - 10357172
Alignment:
Q  232 ttaacataaaaagggaggggagtgtaattcaagcatc 268  Q
    ||||||||| | |||||||||||||||||||||||||    
T  10357136 ttaacataagaggggaggggagtgtaattcaagcatc 10357172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 12353446 - 12353414
Alignment:
Q  201 agagaagtttgaattacactctcatctcctctt 233  Q
    ||||||||||||||||||||||||| |||||||    
T  12353446 agagaagtttgaattacactctcatttcctctt 12353414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 17829714 - 17829742
Alignment:
Q  242 aagggaggggagtgtaattcaagcatctt 270  Q
    |||||||||||||||||||||||||||||    
T  17829714 aagggaggggagtgtaattcaagcatctt 17829742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 10131 - 10164
Alignment:
Q  237 ataaaaagggaggggagtgtaattcaagcatctt 270  Q
    |||| |||||||||||||||||||||||||||||    
T  10131 ataacaagggaggggagtgtaattcaagcatctt 10164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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