View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20630_low_2 (Length: 503)

Name: NF20630_low_2
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20630_low_2
NF20630_low_2
[»] scaffold0568 (4 HSPs)
scaffold0568 (108-488)||(1820-2200)
scaffold0568 (108-488)||(8422-8802)
scaffold0568 (1-97)||(2282-2378)
scaffold0568 (1-97)||(8884-8980)
[»] chr4 (5 HSPs)
chr4 (201-488)||(17059899-17060186)
chr4 (1-96)||(17060306-17060401)
chr4 (391-488)||(43262189-43262286)
chr4 (108-148)||(17060184-17060224)
chr4 (399-478)||(36229134-36229211)
[»] chr1 (2 HSPs)
chr1 (378-488)||(48223163-48223273)
chr1 (394-483)||(48223464-48223555)
[»] chr2 (2 HSPs)
chr2 (120-227)||(21990432-21990540)
chr2 (1-79)||(29158111-29158189)
[»] chr5 (1 HSPs)
chr5 (254-319)||(5523931-5523996)


Alignment Details
Target: scaffold0568 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 108 - 488
Target Start/End: Complemental strand, 2200 - 1820
Alignment:
Q  108 gactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2200 gactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaag 2101  T
Q  208 ttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccatattgaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2100 ttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaa 2001  T
Q  308 agtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2000 agtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaa 1901  T
Q  408 atccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1900 atccaaatcatatgcatcacaaactcagaaattaaacaagttttatacattattttcatattcattctccaaatgacaagt 1820  T

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Target: scaffold0568; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 108 - 488
Target Start/End: Complemental strand, 8802 - 8422
Alignment:
Q  108 gactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8802 gactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaag 8703  T
Q  208 ttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccatattgaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8702 ttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaa 8603  T
Q  308 agtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8602 agtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaa 8503  T
Q  408 atccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8502 atccaaatcatatgcatcacaaactcagaaattaaacaagttttatacattattttcatattcattctccaaatgacaagt 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2282 - 2378
Alignment:
Q  1 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgtaaaattttgacaggttc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  2282 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttc 2378  T

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Target: scaffold0568; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8884 - 8980
Alignment:
Q  1 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgtaaaattttgacaggttc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8884 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttc 8980  T

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Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 201 - 488
Target Start/End: Complemental strand, 17060186 - 17059899
Alignment:
Q  201 aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17060186 aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat 17060087  T
Q  301 attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17060086 attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg 17059987  T
Q  401 taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17059986 taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt 17059899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 17060306 - 17060401
Alignment:
Q  1 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgtaaaattttgacaggtt 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17060306 gagcatggcaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgcaaaattttgaccggtt 17060401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 488
Target Start/End: Original strand, 43262189 - 43262286
Alignment:
Q  391 taaattcttgtaaccaaatccaaatcatat--gcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt 488  Q
    |||| ||||||||||||||||||| |||||  ||||||||||||||  || ||||||||| || | |||||||||||||| ||||||||| |||| ||||    
T  43262189 taaagtcttgtaaccaaatccaaaccatatatgcatcacaaactca--aactaaacaagtcttgtgcatcattttcatatccattctccacatgagaagt 43262286  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 17060224 - 17060184
Alignment:
Q  108 gactctgaattctctcaacaattccaaccacaatcagcaaa 148  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  17060224 gactttgaattctctcaacaattccaaccacaatcagcaaa 17060184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 478
Target Start/End: Complemental strand, 36229211 - 36229134
Alignment:
Q  399 tgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcca 478  Q
    |||||| ||||||||| ||||||||||| |  |||| ||||||||||||| || | ||| ||||||||||||||||||||    
T  36229211 tgtaacgaaatccaaaccatatgcatcaga--ctcaaaaattaaacaagtcttgtgcattattttcatattcattctcca 36229134  T

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Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 378 - 488
Target Start/End: Complemental strand, 48223273 - 48223163
Alignment:
Q  378 ttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc 477  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48223273 ttcttcaaaaagttaaagtcttgtaaccaaatccaaatcatatgcagcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc 48223174  T
Q  478 aaatgacaagt 488  Q
    | |||||||||    
T  48223173 agatgacaagt 48223163  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 48223555 - 48223464
Alignment:
Q  394 attcttgtaaccaaatccaaatcatat--gcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatga 483  Q
    ||||| ||||||||||||||| |||||  |||||||| ||| |  |||||||||| | || |||||||||||||||| ||||||||| ||||    
T  48223555 attctggtaaccaaatccaaaccatatatgcatcacagactaaacaattaaacaaatcttctacatcattttcatatacattctccacatga 48223464  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 21990432 - 21990540
Alignment:
Q  120 tctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaag-cccataaacaataaataaattaggagaaaaaagttaacaaaatg 218  Q
    ||||| ||||||||||||||||||||||  || |||||||||||||||||| | | ||||||||||||||| | |||||||||||| |||||||||||||    
T  21990432 tctcatcaattccaaccacaatcagcaactacatcttcatcccctatatataagggcccataaacaataaacagattaggagaaaagagttaacaaaatg 21990531  T
Q  219 caatagtaa 227  Q
    |||||||||    
T  21990532 caatagtaa 21990540  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 29158111 - 29158189
Alignment:
Q  1 gagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattg 79  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  29158111 gagcaaggtaatgcattggaagcctacctgttgccaatatttgacccaaatatatctcccagaaatgtggctataattg 29158189  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 5523996 - 5523931
Alignment:
Q  254 aactctttctacacttgatgctcaaaccttactaaagattaaaccatattgaaaagtaaagaacat 319  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||| |||||    
T  5523996 aactctttctatacttgatgctcaaaccttattgaagattaaaccatattgaagagtaaaaaacat 5523931  T

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