View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20630_low_22 (Length: 248)

Name: NF20630_low_22
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20630_low_22
NF20630_low_22
[»] chr2 (24 HSPs)
chr2 (17-248)||(39788535-39788765)
chr2 (157-245)||(6177774-6177862)
chr2 (160-245)||(41643874-41643959)
chr2 (162-245)||(18947559-18947642)
chr2 (157-245)||(19073356-19073445)
chr2 (172-245)||(18779362-18779435)
chr2 (158-195)||(22963400-22963437)
chr2 (158-195)||(22998040-22998077)
chr2 (155-203)||(19424786-19424834)
chr2 (157-203)||(19093412-19093458)
chr2 (159-245)||(42005390-42005476)
chr2 (158-203)||(19313852-19313897)
chr2 (158-203)||(41465509-41465554)
chr2 (159-203)||(13711465-13711509)
chr2 (157-245)||(34441882-34441970)
chr2 (156-203)||(5881532-5881579)
chr2 (170-245)||(27138982-27139056)
chr2 (156-193)||(11366549-11366586)
chr2 (158-195)||(26357577-26357614)
chr2 (158-203)||(33551144-33551189)
chr2 (160-201)||(36641988-36642029)
chr2 (156-193)||(43446475-43446512)
chr2 (155-203)||(17054254-17054302)
chr2 (155-203)||(17071895-17071943)
[»] chr3 (26 HSPs)
chr3 (157-245)||(40640595-40640683)
chr3 (156-243)||(45879461-45879548)
chr3 (161-245)||(38392589-38392673)
chr3 (159-238)||(32180715-32180794)
chr3 (158-243)||(49359591-49359676)
chr3 (158-244)||(47930628-47930714)
chr3 (159-238)||(19606882-19606961)
chr3 (172-245)||(7568680-7568753)
chr3 (160-245)||(44880794-44880878)
chr3 (156-193)||(3655352-3655389)
chr3 (157-206)||(22450958-22451007)
chr3 (156-203)||(7327623-7327670)
chr3 (159-194)||(14586795-14586830)
chr3 (155-238)||(18272192-18272274)
chr3 (156-203)||(26941400-26941447)
chr3 (160-203)||(53818512-53818555)
chr3 (157-203)||(21193596-21193642)
chr3 (157-203)||(35844316-35844362)
chr3 (157-195)||(53175713-53175751)
chr3 (158-195)||(4015451-4015488)
chr3 (158-203)||(20373436-20373481)
chr3 (156-193)||(40552409-40552446)
chr3 (160-193)||(43976035-43976068)
chr3 (158-203)||(51213121-51213166)
chr3 (157-193)||(21009955-21009991)
chr3 (159-203)||(29163839-29163883)
[»] chr5 (17 HSPs)
chr5 (156-245)||(36055835-36055924)
chr5 (159-238)||(10237415-10237494)
chr5 (157-245)||(22616493-22616580)
chr5 (160-238)||(41417547-41417625)
chr5 (156-203)||(13380493-13380540)
chr5 (159-237)||(21320752-21320830)
chr5 (156-203)||(39572817-39572864)
chr5 (157-203)||(8742017-8742063)
chr5 (158-206)||(14409453-14409501)
chr5 (156-203)||(9200231-9200278)
chr5 (157-203)||(5112443-5112489)
chr5 (157-203)||(19119858-19119904)
chr5 (158-203)||(7693230-7693275)
chr5 (156-193)||(12164929-12164966)
chr5 (159-203)||(22980794-22980838)
chr5 (157-193)||(24886101-24886137)
chr5 (197-245)||(31878422-31878470)
[»] chr6 (15 HSPs)
chr6 (157-245)||(19631748-19631836)
chr6 (155-245)||(30338473-30338563)
chr6 (157-245)||(11084113-11084201)
chr6 (157-245)||(26301884-26301972)
chr6 (156-203)||(7055354-7055401)
chr6 (159-206)||(20768087-20768134)
chr6 (157-203)||(8513232-8513278)
chr6 (155-203)||(3880078-3880126)
chr6 (160-208)||(6614034-6614082)
chr6 (160-203)||(30353497-30353540)
chr6 (157-203)||(4318962-4319008)
chr6 (157-203)||(5627390-5627436)
chr6 (158-203)||(24662193-24662238)
chr6 (157-193)||(1945832-1945868)
chr6 (158-206)||(7235170-7235218)
[»] chr4 (25 HSPs)
chr4 (160-243)||(2266819-2266902)
chr4 (157-238)||(2704511-2704592)
chr4 (161-234)||(17612338-17612411)
chr4 (159-245)||(51204580-51204670)
chr4 (158-203)||(55241270-55241315)
chr4 (159-203)||(4597994-4598038)
chr4 (158-206)||(28003149-28003197)
chr4 (157-245)||(54995760-54995848)
chr4 (160-243)||(20097450-20097537)
chr4 (157-203)||(32912746-32912792)
chr4 (157-203)||(34361657-34361703)
chr4 (155-193)||(37663915-37663953)
chr4 (157-203)||(38812263-38812309)
chr4 (157-206)||(32579443-32579492)
chr4 (157-206)||(38011853-38011902)
chr4 (160-203)||(27396618-27396661)
chr4 (160-195)||(34948271-34948306)
chr4 (160-203)||(52516599-52516642)
chr4 (157-203)||(4396325-4396371)
chr4 (157-203)||(35021201-35021247)
chr4 (160-229)||(33255501-33255570)
chr4 (158-203)||(38811813-38811858)
chr4 (158-203)||(39397918-39397963)
chr4 (160-244)||(9743590-9743674)
chr4 (157-193)||(25701233-25701269)
[»] chr7 (19 HSPs)
chr7 (158-245)||(23402332-23402419)
chr7 (167-245)||(22955273-22955351)
chr7 (174-245)||(37854255-37854326)
chr7 (158-245)||(4902340-4902427)
chr7 (159-206)||(48928701-48928748)
chr7 (158-203)||(5657622-5657667)
chr7 (158-203)||(6546494-6546539)
chr7 (172-245)||(7742933-7743006)
chr7 (160-203)||(25691686-25691729)
chr7 (159-203)||(24211717-24211761)
chr7 (157-193)||(30055500-30055536)
chr7 (158-238)||(8133527-8133609)
chr7 (157-200)||(26524471-26524514)
chr7 (157-203)||(17842727-17842773)
chr7 (157-203)||(18797303-18797349)
chr7 (158-195)||(8861260-8861297)
chr7 (158-203)||(37109847-37109892)
chr7 (157-234)||(40381939-40382016)
chr7 (157-189)||(9355981-9356013)
[»] scaffold0200 (1 HSPs)
scaffold0200 (155-245)||(24778-24868)
[»] chr1 (21 HSPs)
chr1 (174-243)||(16127536-16127605)
chr1 (155-239)||(13876886-13876970)
chr1 (156-243)||(16132473-16132560)
chr1 (157-203)||(32267029-32267075)
chr1 (158-208)||(43579242-43579292)
chr1 (195-243)||(10758263-10758311)
chr1 (158-206)||(31621685-31621733)
chr1 (159-206)||(14758038-14758085)
chr1 (157-203)||(1547282-1547328)
chr1 (158-203)||(23999343-23999388)
chr1 (157-205)||(4150488-4150536)
chr1 (156-203)||(18422645-18422692)
chr1 (157-203)||(11742485-11742531)
chr1 (157-203)||(16415640-16415686)
chr1 (160-206)||(33725732-33725778)
chr1 (157-203)||(37619031-37619077)
chr1 (158-243)||(27118330-27118415)
chr1 (156-193)||(30254418-30254455)
chr1 (156-193)||(30254852-30254889)
chr1 (158-195)||(38823210-38823247)
chr1 (158-203)||(47682628-47682673)
[»] chr8 (17 HSPs)
chr8 (157-238)||(4108880-4108961)
chr8 (156-203)||(1150251-1150298)
chr8 (157-203)||(1204925-1204971)
chr8 (159-205)||(3858849-3858895)
chr8 (158-203)||(15009241-15009286)
chr8 (156-195)||(7998360-7998399)
chr8 (159-245)||(23176724-23176811)
chr8 (156-203)||(27082984-27083031)
chr8 (156-203)||(30654729-30654776)
chr8 (167-245)||(8151373-8151451)
chr8 (157-195)||(39099263-39099301)
chr8 (158-203)||(4133154-4133199)
chr8 (158-203)||(5300092-5300137)
chr8 (160-205)||(6446707-6446752)
chr8 (156-245)||(7290718-7290806)
chr8 (158-203)||(13307622-13307667)
chr8 (158-206)||(33906223-33906271)
[»] scaffold0009 (1 HSPs)
scaffold0009 (156-203)||(42346-42393)
[»] scaffold0312 (1 HSPs)
scaffold0312 (157-238)||(9099-9184)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 39788765 - 39788535
Alignment:
Q  17 aattaatttagtgagcaagaccattagtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39788765 aattaatttagtgagcaagaccattagtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcat 39788666  T
Q  117 tttatatttaatatataactttcacccgatnnnnnnnngtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatc 216  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  39788665 tttatatttaatatataactttcacccgat-aaaaaaagtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatagtcaatc 39788567  T
Q  217 attgagcatttgtgtatttaatccatgtccat 248  Q
    ||||||||||||||||||||||||||||||||    
T  39788566 attgagcatttgtgtatttaatccatgtccat 39788535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 6177774 - 6177862
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| || || |||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  6177774 aggaaaattctacggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 6177862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 41643874 - 41643959
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||||| |||||||||||||| | |||||||||| | ||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  41643874 aaaattctatggtgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 41643959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 18947642 - 18947559
Alignment:
Q  162 aattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||| |||||||||||||| | ||| |||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtc 18947559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 19073356 - 19073445
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctag-tgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| ||||||||||| || ||||||| |||| | | |||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  19073356 aggaaaattctatggtgaagttatgagaatgattttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtc 19073445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 18779435 - 18779362
Alignment:
Q  172 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||| |||||||||  |  |||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  18779435 tgaagtcataaaaatgactttattgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtc 18779362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 22963400 - 22963437
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22963400 ggaaaattttatggtgaagtcataagaatgacttttct 22963437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 22998077 - 22998040
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22998077 ggaaaattttatggtgaagtcataagaatgacttttct 22998040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 19424834 - 19424786
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  19424834 gtaggaaaattttatggtgaagtcatgagaatggcttttctggtgaagt 19424786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19093412 - 19093458
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  19093412 aggaaaattttatggtgaagtcatgagaatgatttttctggtgaagt 19093458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 42005390 - 42005476
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||| |||||||||||||| | ||||| |||| | ||||||| ||||| || | ||||||  |||||| |||||||||||||||    
T  42005390 gaaaattctatggtgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtc 42005476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 19313852 - 19313897
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  19313852 ggaaaattctatggtgaagtcattagaatgacttttctggtgaagt 19313897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 41465509 - 41465554
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  41465509 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 41465554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 13711465 - 13711509
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggtgaagt 13711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 34441970 - 34441882
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||||||||||| | |||||||||| | || |||| |||||  | || |||||  ||||||||||||||| ||||||    
T  34441970 aggaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtc 34441882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 5881532 - 5881579
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||| |||||||||| | |||||||||||| |||||||    
T  5881532 taggaaaattttattgtgaagtcattaaaatgacttttctggtgaagt 5881579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 27139056 - 27138982
Alignment:
Q  170 ggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||| | |||||||||| |  |||||| |||||| | |||||||| |||||||||| ||||||||||||    
T  27139056 ggtgaagtcatgaaaatgacttttttgatgaagttaaatggccaatcattgatcatttgtgta-ttaatccatgtc 27138982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 11366586 - 11366549
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  11366586 taggaaaattctatggtgaaatcataagaatgactttt 11366549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 26357577 - 26357614
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  26357577 ggaaaattttatggtgaagtcatgaaaatgacttttct 26357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 33551189 - 33551144
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| || ||||||||||| |||||||||||| |||||||||    
T  33551189 ggaaaattctacggtgaagtcatgagaatgacttttttagtgaagt 33551144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 36641988 - 36642029
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaa 201  Q
    |||||| |||||||||||||| |||||||||||||| |||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggtgaa 36642029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 43446512 - 43446475
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  43446512 taggaaaattctatggtgaagtcatgagaatgactttt 43446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 17054302 - 17054254
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17054302 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17054254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 17071943 - 17071895
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17071943 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17071895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 40640683 - 40640595
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  40640683 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtc 40640595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 45879548 - 45879461
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    |||||||||| |||| ||||||||| |||||||||||||| || |||| |||||| | ||||||||||||||||||||||||||||||    
T  45879548 taggaaaattctatgctgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaatccatg 45879461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 38392673 - 38392589
Alignment:
Q  161 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||| |||||||||||||| |||||||||||| | ||||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  38392673 aaattatatggtgaagtcatgagaatgacttttttggtgaagttaaatggtcagtcattgaacatttgtgtatttaatccatgtc 38392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 32180794 - 32180715
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    ||||||| || |||||||| || |||||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  32180794 gaaaattgtacggtgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaat 32180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 49359676 - 49359591
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    |||||||| |||||||||||||| | |||||||||| | ||||||| |||||| | |||||||| |||||||||||||||||||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaatccatg 49359591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 47930714 - 47930628
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgt 244  Q
    |||||||| |||||||||||||| | ||||| |||||| ||||||| |||||  | |||||||| ||||||||||||||||||||||    
T  47930714 ggaaaattctatggtgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgt 47930628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 19606961 - 19606882
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    ||||||| ||||||||||| |||| |||||||||||| ||||||| |||||  | || ||||||||||||||||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaat 19606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 7568753 - 7568680
Alignment:
Q  172 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| | ||| |||||| | ||||||| |||||||  ||||||||||||||||||||||||| ||||||    
T  7568753 tgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaattcatgtc 7568680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 44880794 - 44880878
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||| | || | |||||||||| || |||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  44880794 aaaattttacggtgaaattatgaaaatgactttt-taatgaagttaaatggtcaatcattgaacatttatgtatttaatccatgtc 44880878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 3655389 - 3655352
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3655389 taggaaaattttatggtgaagtcataaaaatgactttt 3655352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 22450958 - 22451007
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  22450958 aggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 22451007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 7327670 - 7327623
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| ||||||||||| || |||||||||||| |||||||||    
T  7327670 taggaaaattctatggtgaagttatgagaatgacttttttagtgaagt 7327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 14586830 - 14586795
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttc 194  Q
    |||||||||||||||||||||| |||||||||||||    
T  14586830 gaaaattttatggtgaagtcattagaatgacttttc 14586795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 18272274 - 18272192
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    ||||||||||| || ||||||||||| ||||||||||||||| ||| || || |   | |||||||| ||||||||||||||||    
T  18272274 gtaggaaaattatacggtgaagtcatgagaatgacttttctaatgacgttaact-cccaatcattgaacatttgtgtatttaat 18272192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 26941447 - 26941400
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| |||||||||||||||||||||| |||| | |||||||    
T  26941447 taggaaaattctatggtgaagtcataagaatgatttttttggtgaagt 26941400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 53818555 - 53818512
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  53818555 aaaattttatggtgaagtcatgagaatgatttttctggtgaagt 53818512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 21193596 - 21193642
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  21193596 aggaaaattctatggtaaagtcatgagaatgacttttctggtgaagt 21193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 35844316 - 35844362
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35844316 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagt 35844362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 53175713 - 53175751
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  53175713 aggaaaattttatggtgaagttatgagaatgacttttct 53175751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 4015451 - 4015488
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  4015451 ggaaaattctatggtgaagtcatgagaatgacttttct 4015488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 20373481 - 20373436
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||    
T  20373481 ggaaaattttatagtgaagtcataagaatgatttttttggtgaagt 20373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 40552446 - 40552409
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  40552446 taggaaaattctatggtgaagtcatgagaatgactttt 40552409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 43976068 - 43976035
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||||||||||||| ||||||||||||    
T  43976068 aaaattttatggtgaagtcatgagaatgactttt 43976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 51213166 - 51213121
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  51213166 ggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 51213121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 21009991 - 21009955
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21009991 aggaaaattttatggtgaagttataagaatgattttt 21009955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 29163839 - 29163883
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||||||||||| | ||||| |||||| |||||||    
T  29163839 gaaaattttatggtgaagtcattaaaatgatttttctggtgaagt 29163883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 36055924 - 36055835
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  36055924 taggaaaattttatggtgatgtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcatgtc 36055835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 10237415 - 10237494
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  10237415 gaaaattctattgtgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaat 10237494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 22616493 - 22616580
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||||||||||| | |||||||||||| ||||||| |||||| | ||||||||||| || |||||||||||||||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagca-ttatgtatttaatccatgtc 22616580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 41417625 - 41417547
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    |||||| ||||||||| || ||||||||| |||||||||||||| |||||||  |||||||| ||||||||||||||||    
T  41417625 aaaattatatggtgaaatcgtaagaatgatttttctagtgaagttaaatggttaatcattgaacatttgtgtatttaat 41417547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 13380493 - 13380540
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  13380493 taggcaaattttatggtgaagtcatgagaatgacttttctagtgaagt 13380540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 21320752 - 21320830
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 237  Q
    ||||||| ||||||||||| |||| |||||||||| |  |||||| ||||| || ||||||||||||| ||||||||||    
T  21320752 gaaaattctatggtgaagtaataaaaatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaa 21320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 39572817 - 39572864
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  39572817 taggaaaattctatggtgaagtcatgagaatgacttttctagttaagt 39572864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 8742063 - 8742017
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8742063 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8742017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 14409501 - 14409453
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  14409501 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 14409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 9200231 - 9200278
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||| | ||| |||||||| |||||||    
T  9200231 taggaaaattttatggtgaagtcattaaaataacttttctggtgaagt 9200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 5112489 - 5112443
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||||||||||||| | |||||||||| | |||||||    
T  5112489 aggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagt 5112443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 19119858 - 19119904
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  19119858 aggaaaattctatggtgaagtcatgagaatgacttttgtggtgaagt 19119904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 7693230 - 7693275
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||    
T  7693230 ggaaaattctatggtgaagtcattaaaatgacttttctggtgaagt 7693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 12164966 - 12164929
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12164966 taggaaaattttacggtgaagtcatgagaatgactttt 12164929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 22980794 - 22980838
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||| |||||| || |||||||||||||| |||||||    
T  22980794 gaaaattttatgatgaagttatgagaatgacttttctggtgaagt 22980838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 24886101 - 24886137
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  24886101 aggaaaattttatggtgaaatcatgagaatgactttt 24886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 31878422 - 31878470
Alignment:
Q  197 gtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||| |||| ||| |||||| |||||||||||||||||| ||||||    
T  31878422 gtgaagttaaattgtcaatcattaagcatttgtgtatttaattcatgtc 31878470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 19631748 - 19631836
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||  | |||||||| |||||||||||||||||||||||    
T  19631748 aggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtc 19631836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 30338473 - 30338563
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||| |||||| |||| ||||||  | |||||||||||| ||||||||| ||||| |  |||||||||||||| || ||||||||||||||    
T  30338473 gtagaaaaattctatgatgaagttgtgagaatgacttttttagtgaagttaaatgattaatcattgagcatttatgcatttaatccatgtc 30338563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 11084201 - 11084113
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||||||||||| | ||| |||||||| || |||| |||||  | ||||||||  |||| |||||||||||||||||    
T  11084201 aggaaaattctatggtgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtc 11084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 26301972 - 26301884
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| |||||||||||||||| ||||| |||| | ||||||| |||||  | ||||||||  |||| |||||||||| ||||||    
T  26301972 aggaaaattatatggtgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtc 26301884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 7055401 - 7055354
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||    
T  7055401 taggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 7055354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 20768087 - 20768134
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 20768134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 8513232 - 8513278
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8513232 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 3880126 - 3880078
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  3880126 gtaggaaaattctatggtgaagtcacgagaatgacttttctggtgaagt 3880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 6614082 - 6614034
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 208  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| ||||    
T  6614082 aaaattatatggtgaaatcataagaatgacttttctggtgaagttaaat 6614034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 30353540 - 30353497
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 30353497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 4319008 - 4318962
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  4319008 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 4318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 5627390 - 5627436
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| || |||||||||||||||||||||||| | |||||||    
T  5627390 aggaaaattctaaggtgaagtcataagaatgacttttttggtgaagt 5627436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 24662238 - 24662193
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||    
T  24662238 ggaaaattctatggtaaagtcatgataatgacttttctagtgaagt 24662193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 1945832 - 1945868
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||| || ||||||||||||||||||||||||    
T  1945832 aggaaaattctacggtgaagtcataagaatgactttt 1945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 7235218 - 7235170
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||| ||||||||||| || |||||||||||||  ||||||||||    
T  7235218 ggaaaattctatggtgaagttatgagaatgacttttccggtgaagtcaa 7235170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 2266902 - 2266819
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    |||||| |||||||||||||| | |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  2266902 aaaattatatggtgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaatccatg 2266819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 2704511 - 2704592
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||| ||||| || ||||||||  |||||||||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaat 2704592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 17612338 - 17612411
Alignment:
Q  161 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 234  Q
    ||||| |||||||||||||| ||||||| |||| || |||||| |||||||| |||||| ||||||||||||||    
T  17612338 aaattctatggtgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgtatt 17612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 51204580 - 51204670
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||| ||    ||| || || ||||||| |||||||||||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtc 51204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 55241315 - 55241270
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  55241315 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 55241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 4597994 - 4598038
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  4597994 gaaaattttatggtgaagtcattagaatgacttttctggtgaagt 4598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28003197 - 28003149
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  28003197 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 28003149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 54995848 - 54995760
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||| || | ||||||||| | |||||||||| | ||||||| |||||| | |||||||  |||||| ||||||||||||||||    
T  54995848 aggaaaattctacgatgaagtcatgataatgacttttttggtgaagttaaatggccaatcattgtacatttgcgtatttaatccatgtc 54995760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 20097537 - 20097450
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| ||    ||| || ||||||  ||||||||||||||||| ||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcatg 20097450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 32912792 - 32912746
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  32912792 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 32912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 34361703 - 34361657
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  34361703 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 34361657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 37663953 - 37663915
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37663953 gtaggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 38812309 - 38812263
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  38812309 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 38812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 32579443 - 32579492
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||||||||||||||||  | |||||||||||||| ||||||||||    
T  32579443 aggaaaattttatggtgaagttctgagaatgacttttctggtgaagtcaa 32579492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 38011853 - 38011902
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  38011853 aggaaaattctatggtgaaatcatgagaatgacttttctggtgaagtcaa 38011902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 27396618 - 27396661
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 27396661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 34948306 - 34948271
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34948306 aaaattttatggtgaagtcatgagaatgacttttct 34948271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 52516599 - 52516642
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||| |||||||||||| | |||||||    
T  52516599 aaaattttatggtgaagtcatgagaatgacttttatggtgaagt 52516642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 4396325 - 4396371
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| ||| |||||||||||| |||||||||| |||||||||    
T  4396325 aggaaaattctatagtgaagtcataaaaatgacttttttagtgaagt 4396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 35021247 - 35021201
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35021247 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 35021201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 33255501 - 33255570
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgt 229  Q
    |||||| |||||||||||||  ||||| |||||| | ||||||| |||||| | || |||||||||||||    
T  33255501 aaaattatatggtgaagtcacgagaatcacttttttggtgaagttaaatggccaattattgagcatttgt 33255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 38811813 - 38811858
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  38811813 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 38811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 39397918 - 39397963
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  39397918 ggaaaattctatggtgaagtcattagaatgacttttatggtgaagt 39397963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 9743590 - 9743674
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgt 244  Q
    |||||| |||||| |||||||   |||||||||| | ||||| | |||||  | || ||||| ||||||||||||||||||||||    
T  9743590 aaaattctatggtaaagtcatgtaaatgacttttttggtgaaattaaatgaccaattattgaacatttgtgtatttaatccatgt 9743674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 25701269 - 25701233
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||||||||||||||||| | ||||||||||    
T  25701269 aggaaaattttatggtgaagtcatgataatgactttt 25701233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 23402419 - 23402332
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||| ||||||    
T  23402419 ggaaaattctatggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtc 23402332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 22955351 - 22955273
Alignment:
Q  167 tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||| || |||||||||||||| ||||||| |||||||| || ||||| |||||||||||||||||||||||    
T  22955351 tatggtgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtc 22955273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 37854326 - 37854255
Alignment:
Q  174 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||| |||||||||||||| ||||| | |||||||| || |||||||||||||||||||||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtc 37854255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 4902340 - 4902427
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||||||||||||||| | ||| | |||| | ||||| | ||||| || || ||||||||||| |||||||||||||||||    
T  4902340 ggaaaattttatggtgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaatccatgtc 4902427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 48928748 - 48928701
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  48928748 gaaaattttatggtgaagtcatgagaatgacttttctggtgaagtcaa 48928701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 5657667 - 5657622
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  5657667 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 5657622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 6546494 - 6546539
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  6546494 ggaaaattctatggtgaagtcataagaatgatttttctagtgaagt 6546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 7742933 - 7743006
Alignment:
Q  172 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||| |||||||||| |  |||||| ||||| || ||||||||| |||||||||||||||| |||||    
T  7742933 tgaagtcataaaaatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaatctatgtc 7743006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 25691729 - 25691686
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  25691729 aaaattttatggtgaagtcatgagaatgacttttctcgtgaagt 25691686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 24211717 - 24211761
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggtgaagt 24211761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 30055500 - 30055536
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgactttt 193  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30055500 aggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 8133609 - 8133527
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaa--tggtcgatcattgagcatttgtgtatttaat 238  Q
    |||||||| ||  |||||||||||||||| |||||| | ||||||| |||  || || |||||| ||||||||||||||||||    
T  8133609 ggaaaattctactgtgaagtcataagaataacttttttggtgaagttaaaaatgatcaatcattaagcatttgtgtatttaat 8133527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 26524514 - 26524471
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtga 200  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  26524514 aggaaaattctatggtgaagtcatgagaatgacttttctggtga 26524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 17842773 - 17842727
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||||| |||||||||| | |||||||    
T  17842773 aggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 17842727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 18797303 - 18797349
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  18797303 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 18797349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 8861260 - 8861297
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  8861260 ggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 37109847 - 37109892
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||||| |||||||||| | |||||||    
T  37109847 ggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 37109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 40381939 - 40382016
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 234  Q
    ||||||||| || |||||||| || |||||||||||||| ||||||| ||||| |  |||||| || |||| ||||||    
T  40381939 aggaaaattctacggtgaagttatgagaatgacttttctggtgaagttaaatgattaatcattaagtatttatgtatt 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 9356013 - 9355981
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgac 189  Q
    |||||||||||||||||||||||| ||||||||    
T  9356013 aggaaaattttatggtgaagtcatgagaatgac 9355981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 24868 - 24778
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||||||| |||||  |||| || ||||||| |||||| ||||| | |||||||| ||||||||||||||||||||||||| ||||||    
T  24868 gtaggaaaattctatggcaaagttatgagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtc 24778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 16127536 - 16127605
Alignment:
Q  174 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    ||||||| | |||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaatccatg 16127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 13876970 - 13876886
Alignment:
Q  155 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatc 239  Q
    ||||||||||| ||||||||||| || | |||||||||| | ||||||| ||||| || ||||||||| ||||||||||||||||    
T  13876970 gtaggaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaatc 13876886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 16132473 - 16132560
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    |||||||||| |||||||||||||  ||| |||||||| | ||||||| ||||||   || |||||||||||||||||||||||||||    
T  16132473 taggaaaattctatggtgaagtcaatagattgacttttttggtgaagttaaatggcaaattattgagcatttgtgtatttaatccatg 16132560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 32267029 - 32267075
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||    
T  32267029 aggaaaattttatggtgaagtcataagaatgactttttttgtgaagt 32267075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 43579242 - 43579292
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 208  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  43579242 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagttaaat 43579292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 10758311 - 10758263
Alignment:
Q  195 tagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  10758311 tagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatg 10758263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 31621733 - 31621685
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||    
T  31621733 ggaaaattctacggtgaagtcatgagaatgacttttctagtgaagtcaa 31621685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 14758038 - 14758085
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  14758038 gaaaattttacggtgaagtcatgagaatgacttttctggtgaagtcaa 14758085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 1547282 - 1547328
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  1547282 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 1547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 23999343 - 23999388
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||    
T  23999343 ggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 23999388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 4150536 - 4150488
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 205  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||||    
T  4150536 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagtca 4150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 18422645 - 18422692
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||||    
T  18422645 taggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 18422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 11742531 - 11742485
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  11742531 aggaaaattttatcgtgaagttatgagaatgacttttctggtgaagt 11742485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 16415640 - 16415686
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  16415640 aggaaaattctaaggtgaagtcatgagaatgacttttctggtgaagt 16415686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 33725778 - 33725732
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||    
T  33725778 aaaattctatggtaaagtcaagagaatgacttttctagtgaagtcaa 33725732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 37619077 - 37619031
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||||||    
T  37619077 aggaaaattctatggtgaagttataagaatgacttttttggtgaagt 37619031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 27118330 - 27118415
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatg 243  Q
    ||||||||||||| | ||||||| | |||||||||| |  | |||| |||| ||  ||||| |||||||| |||||||||||||||    
T  27118330 ggaaaattttatgataaagtcatgaaaatgacttttttgataaagttaaatagttaatcatggagcatttatgtatttaatccatg 27118415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 30254418 - 30254455
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  30254418 taggaaaattctatggtgaagttataagaatgactttt 30254455  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 30254852 - 30254889
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgactttt 193  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  30254852 taggaaaattctatggtgaagtcataataatgactttt 30254889  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 38823210 - 38823247
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  38823210 ggaaaattctatggtgaagtcatgagaatgacttttct 38823247  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 47682673 - 47682628
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  47682673 ggaaaattttatggtgaagtcatgagagtgacttttttggtgaagt 47682628  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 4108961 - 4108880
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaat 238  Q
    |||||||||||||||||||||||| | |||||||||| | || |||| |||||  | ||||||||  |||||||||||||||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaat 4108880  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 1150298 - 1150251
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  1150298 taggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 1150251  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 1204925 - 1204971
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||||    
T  1204925 aggaaaattttacggtgaagtcatgagaatgacttttctggtgaagt 1204971  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 3858849 - 3858895
Alignment:
Q  159 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 205  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  3858849 gaaaattttatggtgaaataatacgaatgacttttctagtgaagtca 3858895  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 15009241 - 15009286
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||    
T  15009241 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 15009286  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 7998360 - 7998399
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  7998360 taggaaaattctatggtgaagtcatgagaatgacttttct 7998399  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 23176811 - 23176724
Alignment:
Q  159 gaaaattt-tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||||||| |||||||||||||| | |||||||||| | ||||||| |||||  | ||||||||  ||||||||| ||||| ||||||    
T  23176811 gaaaatttctatggtgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgtacttaatgcatgtc 23176724  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 27083031 - 27082984
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||||| |||||||||||||| ||| |||||||||| |||||||    
T  27083031 taggaaaattctatggtgaagtcatcagactgacttttctggtgaagt 27082984  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 30654776 - 30654729
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||||||| ||| |||| | |||||||    
T  30654776 taggaaaattttatggtgaagtcataagagtgatttttttggtgaagt 30654729  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 8151451 - 8151373
Alignment:
Q  167 tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    ||||||| |||||| | |||||||||| | ||||||| |||||  | ||||||||  ||||||| ||||||||||||||    
T  8151451 tatggtgcagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgcatttaatccatgtc 8151373  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 39099301 - 39099263
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttct 195  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  39099301 aggaaaattctatggtgaagtcatgagaatgacttttct 39099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 4133199 - 4133154
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||| ||||||| |||||||||||| | |||||||    
T  4133199 ggaaaattttatggtcaagtcatcagaatgacttttttggtgaagt 4133154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 5300137 - 5300092
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| |||||||||||| || ||||||    
T  5300137 ggaaaattctatggtgaagtcatgagaatgacttttttaatgaagt 5300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 6446752 - 6446707
Alignment:
Q  160 aaaattttatggtgaagtcataagaatgacttttctagtgaagtca 205  Q
    |||||| |||||||||||||| | |||||||||||| |||||||||    
T  6446752 aaaattctatggtgaagtcatgataatgacttttctggtgaagtca 6446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 7290718 - 7290806
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaatccatgtc 245  Q
    |||||||||| ||||||||||||||   ||||| |||||| |||| || |||||||  |||||||| ||||||||  |||||| ||||||    
T  7290718 taggaaaattctatggtgaagtcatgcaaatga-ttttctggtgacgttaaatggtgaatcattgatcatttgtgcgtttaattcatgtc 7290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 13307622 - 13307667
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  13307622 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 13307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 33906223 - 33906271
Alignment:
Q  158 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 206  Q
    |||||||| ||||||||| | || |||||||||||||| ||||||||||    
T  33906223 ggaaaattctatggtgaaattatgagaatgacttttctggtgaagtcaa 33906271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 42346 - 42393
Alignment:
Q  156 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 203  Q
    ||||||||||||||||||||||||| ||||| | |||||| |||||||    
T  42346 taggaaaattttatggtgaagtcatgagaataatttttctggtgaagt 42393  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 9184 - 9099
Alignment:
Q  157 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtca----aatggtcgatcattgagcatttgtgtatttaat 238  Q
    ||||||||| |||| |||||| || |||||||||||| |  ||||||||    |||| || |||||||| ||||||||||||||||    
T  9184 aggaaaattctatgatgaagttatgagaatgacttttttgctgaagtcatgagaatgatcaatcattgaacatttgtgtatttaat 9099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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