View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20630_low_23 (Length: 246)

Name: NF20630_low_23
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20630_low_23
NF20630_low_23
[»] chr8 (3 HSPs)
chr8 (87-241)||(27513624-27513778)
chr8 (128-241)||(8675131-8675245)
chr8 (5-54)||(34154786-34154834)
[»] chr1 (2 HSPs)
chr1 (55-228)||(39210040-39210197)
chr1 (87-219)||(24036791-24036927)
[»] chr3 (2 HSPs)
chr3 (116-225)||(9461180-9461298)
chr3 (5-54)||(47594475-47594524)
[»] chr2 (1 HSPs)
chr2 (97-209)||(38950770-38950885)
[»] chr4 (2 HSPs)
chr4 (5-54)||(47952676-47952725)
chr4 (5-54)||(26594675-26594724)
[»] chr6 (2 HSPs)
chr6 (161-213)||(18331979-18332031)
chr6 (92-159)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 27513624 - 27513778
Alignment:
Q  87 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 186  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  187 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttc 241  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttc 27513778  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 8675245 - 8675131
Alignment:
Q  128 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 226  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  227 gtcttcggcaccttc 241  Q
    |||||||||||||||    
T  8675145 gtcttcggcaccttc 8675131  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 34154786 - 34154834
Alignment:
Q  5 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 54  Q
    ||||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  34154786 aggtgtagaattgtatgttgccacat-agtgtgtcaatgtatcatctctc 34154834  T

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Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 39210197 - 39210040
Alignment:
Q  55 ttcttgtatacatcaaatggagcctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatca 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  39210197 ttcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttc---------- 39210108  T
Q  155 aaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 228  Q
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210107 ------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  87 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 185  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  186 ----ggcttgcagatagtttcatcaacttcccttgtat 219  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  116 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 206  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  207 acttcccttgtattttcaa 225  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 47594524 - 47594475
Alignment:
Q  5 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 54  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||| |||||    
T  47594524 aggtgtagaatggtatgttgccatataggggtgtcaacgtatcagctctc 47594475  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  97 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 190  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  191 gcagatagtttcatcaact 209  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 47952676 - 47952725
Alignment:
Q  5 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952676 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 47952725  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 26594675 - 26594724
Alignment:
Q  5 aggtgtagagtggtatgttgccacataagtgtgtcaacgtatcatctctc 54  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  26594675 aggtgtagagtggtatgttgccacataagtgtgtccatgtatcatctctc 26594724  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  161 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 213  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  92 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 159  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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