View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_26 (Length: 207)
Name: NF20630_low_26
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 36939708 - 36939542
Alignment:
| Q |
23 |
caccacagaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatata |
122 |
Q |
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| T |
36939708 |
caccaaagaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatata |
36939609 |
T |
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| Q |
123 |
gcccccaaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttct |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939608 |
gcccccaaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttct |
36939542 |
T |
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Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 36941416 - 36941563
Alignment:
| Q |
23 |
caccacagaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatata |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
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| T |
36941416 |
caccaaagaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatata |
36941515 |
T |
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| Q |
123 |
gcccccaaacccactccacaatatgtatttcattttcttgagccttaa |
170 |
Q |
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||||||||||||| |||||||| | |||||||||||||||||| |||| |
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| T |
36941516 |
gcccccaaacccattccacaatgtttatttcattttcttgagcattaa |
36941563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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