View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20630_low_3 (Length: 502)
Name: NF20630_low_3
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_3 |
 | |
|
| [»] scaffold0568 (2 HSPs) |
| | |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0568 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 2306 - 1820
Alignment:
| Q |
1 |
aggcttccagtgcattaccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2306 |
aggcttccagtgcattaccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
2207 |
T |
|
| Q |
101 |
ttttttgactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2206 |
ttttttgactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggaga |
2107 |
T |
|
| Q |
201 |
aaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2106 |
aaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccata |
2007 |
T |
|
| Q |
301 |
ttgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2006 |
ttgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgt |
1907 |
T |
|
| Q |
401 |
aaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1906 |
aaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacattattttcatattcattctccaaatgacaagt |
1820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 8908 - 8422
Alignment:
| Q |
1 |
aggcttccagtgcattaccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8908 |
aggcttccagtgcattaccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
8809 |
T |
|
| Q |
101 |
ttttttgactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8808 |
ttttttgactctgaattctctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggaga |
8709 |
T |
|
| Q |
201 |
aaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8708 |
aaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccata |
8609 |
T |
|
| Q |
301 |
ttgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8608 |
ttgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgt |
8509 |
T |
|
| Q |
401 |
aaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8508 |
aaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacattattttcatattcattctccaaatgacaagt |
8422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 200 - 487
Target Start/End: Complemental strand, 17060186 - 17059899
Alignment:
| Q |
200 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactaaagattaaaccat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17060186 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat |
17060087 |
T |
|
| Q |
300 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctgataataaagtctagtaagcttcttcaaaaatttaaattcttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060086 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg |
17059987 |
T |
|
| Q |
400 |
taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059986 |
taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt |
17059899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 17060330 - 17060184
Alignment:
| Q |
1 |
aggcttccagtgcattaccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060330 |
aggcttccagtgcattgccatgctcttcaagaaacaataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaatccttgaata |
17060231 |
T |
|
| Q |
101 |
ttttttgactctgaattctctcaacaattccaaccacaatcagcaaa |
147 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060230 |
ttttttgactttgaattctctcaacaattccaaccacaatcagcaaa |
17060184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 43262189 - 43262286
Alignment:
| Q |
390 |
taaattcttgtaaccaaatccaaatcatat--gcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagt |
487 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||||| || ||||||||| || | |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
43262189 |
taaagtcttgtaaccaaatccaaaccatatatgcatcacaaactca--aactaaacaagtcttgtgcatcattttcatatccattctccacatgagaagt |
43262286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 36229211 - 36229134
Alignment:
| Q |
398 |
tgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcca |
477 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | |||| ||||||||||||| || | ||| |||||||||||||||||||| |
|
|
| T |
36229211 |
tgtaacgaaatccaaaccatatgcatcaga--ctcaaaaattaaacaagtcttgtgcattattttcatattcattctcca |
36229134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 18198994 - 18198940
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
18198994 |
aataagcttctaagaagtacaaaataatgtcagtgtaaacgcttaaatccttaaa |
18198940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 377 - 487
Target Start/End: Complemental strand, 48223273 - 48223163
Alignment:
| Q |
377 |
ttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc |
476 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48223273 |
ttcttcaaaaagttaaagtcttgtaaccaaatccaaatcatatgcagcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc |
48223174 |
T |
|
| Q |
477 |
aaatgacaagt |
487 |
Q |
| |
|
| ||||||||| |
|
|
| T |
48223173 |
agatgacaagt |
48223163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 48223555 - 48223464
Alignment:
| Q |
393 |
attcttgtaaccaaatccaaatcatat--gcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatga |
482 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||| ||| | |||||||||| | || |||||||||||||||| ||||||||| |||| |
|
|
| T |
48223555 |
attctggtaaccaaatccaaaccatatatgcatcacagactaaacaattaaacaaatcttctacatcattttcatatacattctccacatga |
48223464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 20264855 - 20264808
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaat |
83 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
20264855 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaat |
20264808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 21990432 - 21990540
Alignment:
| Q |
119 |
tctcaacaattccaaccacaatcagcaaagacgtcttcatcccctatatatcaag-cccataaacaataaataaattaggagaaaaaagttaacaaaatg |
217 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||||||||||||||| | | ||||||||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
21990432 |
tctcatcaattccaaccacaatcagcaactacatcttcatcccctatatataagggcccataaacaataaacagattaggagaaaagagttaacaaaatg |
21990531 |
T |
|
| Q |
218 |
caatagtaa |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
21990532 |
caatagtaa |
21990540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 28658687 - 28658640
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaat |
83 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
28658687 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaat |
28658640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 5523996 - 5523931
Alignment:
| Q |
253 |
aactctttctacacttgatgctcaaaccttactaaagattaaaccatattgaaaagtaaagaacat |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||| ||||| |
|
|
| T |
5523996 |
aactctttctatacttgatgctcaaaccttattgaagattaaaccatattgaagagtaaaaaacat |
5523931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 4591 - 4537
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
4591 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
4537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 3734140 - 3734086
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
3734140 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
3734086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 2751955 - 2752009
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2751955 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
2752009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 15359607 - 15359553
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
15359607 |
aataagctactaagaagtacaaaataatgtcagtgtaaccacttaaatacttaaa |
15359553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 288803 - 288857
Alignment:
| Q |
36 |
aataagttactaagaagtacaaagtaatgtcagtgtaaacacttaaatacttaaa |
90 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
288803 |
aataagcttctaagaagtacaaaataatgtcagtgtaaacgcttaaatccttaaa |
288857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University