View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20630_low_9 (Length: 398)
Name: NF20630_low_9
Description: NF20630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20630_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 48501225 - 48500860
Alignment:
| Q |
20 |
cacccttgggtacataatagcaaaatggtgcattataagagaattgggtgtaggattacaaacactcgtgccatcgaatccgaaattctcttacgcgacg |
119 |
Q |
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| T |
48501225 |
cacccttgggtacataatagcaaaatggtgcattataagagaattgggtgtaggattacaaacactcgtgccatcgaatccgaaattctcttacgcgacg |
48501126 |
T |
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| Q |
120 |
gagtctcatggtttttggattctgaaaggctacgcgccggttatgacgatgaaactggcgagaaactatgggcaaaatggtaaatttcaaggtattgatg |
219 |
Q |
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| T |
48501125 |
gagtctcatggtttttggattctgaaaggctacgcgccggttatgacgatgaaactggcgagaaactatgggcaaaatggtaaatttcaaggtattgatg |
48501026 |
T |
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| Q |
220 |
ctaaggagtcaataatcaggtacggtctagctcaccaccaattggaagcacacgtgcagttggaatatacagttggattttatgatggattcattcgggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501025 |
ctaaggagtcaataatcaggtacggtctagctcaccaccaattggaagcacacgtgcagttggaatatacagttggattttatgatggattcattcgggt |
48500926 |
T |
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| Q |
320 |
taatacacgtgttgataatatgcgtctccatgtggcgaggttaggttttaaacacggtgatgatgt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500925 |
taatacacgtgttgataatatgcgtctccatgtggcgaggttaggttttaaacacggtgatgatgt |
48500860 |
T |
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