View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20631_low_1 (Length: 264)
Name: NF20631_low_1
Description: NF20631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20631_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 46380314 - 46380559
Alignment:
| Q |
1 |
aaaagattgagacgttgtcaaggattactactattctcaaagatgttattcagaataaggtataaccaatatcttcattattttactcatttatcaattc |
100 |
Q |
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| T |
46380314 |
aaaagattgagacgttgtcaaggattactactattctcaaagatgttattcagaataaggtataaccaatatcttcattattttactcatttatcaattg |
46380413 |
T |
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| Q |
101 |
cagtctacaacagattgttgctaattaataactcagtctgatttgattattttatcgggctttcatttgaaaggaactgtgctgtcagacgtcagtgact |
200 |
Q |
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| T |
46380414 |
cagtctacaacagattgttgctaattaataactcagtctgatttgattattttatcgggctttcatttgaaaggaactgtgctgtcagacgtcagtgact |
46380513 |
T |
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| Q |
201 |
gaattccataaaatgcttcaggagagatataattggttgatgttta |
246 |
Q |
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| T |
46380514 |
gaattccataaaatgcttcaggagagatataattggttgatgttta |
46380559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25755074 - 25755135
Alignment:
| Q |
1 |
aaaagattgagacgttgtcaaggattactactattctcaaagatgttattcagaataaggta |
62 |
Q |
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| T |
25755074 |
aaaagattgagactttggataggattactactattcttaaagatgttattcataataaggta |
25755135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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