View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20631_low_2 (Length: 212)
Name: NF20631_low_2
Description: NF20631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20631_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 1229004 - 1229069
Alignment:
| Q |
19 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggtg |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1229004 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggtg |
1229069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 1229122 - 1229179
Alignment:
| Q |
137 |
gttttatcgttctgatctcattcacttaattgtttgatttgatgtaatcttttgttat |
194 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1229122 |
gttttatcgttctgatctaattcacttaattgtttgatttgatgtaatattttgttat |
1229179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 54267058 - 54267122
Alignment:
| Q |
19 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
83 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || || | ||||||||| ||||||||| |
|
|
| T |
54267058 |
atgaagctcatttgtgggacaagaattgttggaatgagtctcagaacaagaaagggagacaaggt |
54267122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 25049791 - 25049855
Alignment:
| Q |
19 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
83 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |||| ||| |||||| |||||||| |
|
|
| T |
25049791 |
atgaagctcatttgtgggacaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggt |
25049855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University