View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20632_high_1 (Length: 700)
Name: NF20632_high_1
Description: NF20632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20632_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 344 - 680
Target Start/End: Complemental strand, 24200319 - 24199983
Alignment:
| Q |
344 |
catgaacttgtcaatacaaaatattttgcgttgtcaattatcacaatcattcatacatgtgattttataaatagtttatgaccaaagtcccaagagtttt |
443 |
Q |
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| T |
24200319 |
catgaacttgtcaatacaaaatattttgcgttgtcaattatcacaatcattcatacatgtgattttataaatagtttatgaccaaagtcccaagagtttt |
24200220 |
T |
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| Q |
444 |
tatgattgacaataaaaaattacttatattgaaggggaatctgaactaaatcataataatgaataatctaaggagctttgtcgaaataaaagaaattaaa |
543 |
Q |
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| T |
24200219 |
tatgattgacaataaaaaattacttatattgaaggggaatctgaactaaatcataataatgaataatctaaggagctttgtcgaaataaaagaaattaaa |
24200120 |
T |
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| Q |
544 |
tcgacaactgcaagtttacctctttattgccaatgctaatccttctttcttccaaatcagagagaggaattctcattttagtcagaaaggaaatggcatc |
643 |
Q |
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| T |
24200119 |
tcgacaactgcaagtttacctctttattgccaatgctaatccttctttcttccaaatcagagagaggaattctcattttagtcagaaaggaaatcgcatc |
24200020 |
T |
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| Q |
644 |
ggttgaggaacctggtgtgatgactaagtcatctgtt |
680 |
Q |
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| T |
24200019 |
ggttgaggaacctggtgtgatggctaagtcatctgtt |
24199983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 24200660 - 24200343
Alignment:
| Q |
9 |
gagatgaagtgaagagtaataccggaatgactagcttcgaaacataatagaactagaatgtatcattggcataaggcaaacaagataatta----ttaat |
104 |
Q |
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| T |
24200660 |
gagatgaagtgaagagtaataccggagtgactagcttcgaaacataataggactagaatgtatcattggcataaggcaaacaagataattaattattaat |
24200561 |
T |
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| Q |
105 |
gcaaag-ccttgactctaaatatgcaaaattcataatcatcaaacaaagaatatagcataatctcaatgatttagctttatttgattgtttcaaatcatg |
203 |
Q |
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| T |
24200560 |
gcaaagtccttgactctaaatatgcaaaattcataatcatcaaacaaagaatatagcataatcttaatgatttagctttatttgattgtttcaaatcatg |
24200461 |
T |
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| Q |
204 |
aagggcattagtttaagattttcttgtcattggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagatttcagaagact |
303 |
Q |
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| T |
24200460 |
aagggcattagtttaagattttcttgtcattggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagctttcagaagact |
24200361 |
T |
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| Q |
304 |
atgagcctgcagttccac |
321 |
Q |
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| T |
24200360 |
atgagcctgcagttccac |
24200343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 24192552 - 24192240
Alignment:
| Q |
10 |
agatgaagtgaagagtaataccggaatgactagcttcgaaacataatagaactagaatgtatcattggcataaggcaaacaagataattattaatgcaaa |
109 |
Q |
| |
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||||||||||||||||||| | | |||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| | ||||||||||||| |
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| T |
24192552 |
agatgaagtgaagagtaattctgatatgactagcttcgaaacataataggactacaatgtaagattggaggaaggcaaacaagccagttattaatgcaaa |
24192453 |
T |
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| Q |
110 |
g-ccttgactctaaatatgcaaaattcataatcatcaaacaaagaatatagcataatctcaatgatttagctttatttgattgtttcaaatcatgaaggg |
208 |
Q |
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| T |
24192452 |
gtccttaacaataaatatgcgaaattcataatctgcaaacaaagaataaagcataatctcaatgatttagctttatttgattgtttcaaatcatgaagtg |
24192353 |
T |
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| Q |
209 |
cattagtttaagattttcttgtcattggttgcaagaaatggaccaagaccattagtgagagctgatgatgagatcaacgaagatttcagaagactatgag |
308 |
Q |
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| T |
24192352 |
cactagtttaacattttcttgtcattggttgaaagaaatggaccaagaccattagttagagctgatgatgagatcaaagaagctttaagaagactatgag |
24192253 |
T |
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| Q |
309 |
cctgcagttccac |
321 |
Q |
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| T |
24192252 |
cctgcagttccac |
24192240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 521 - 680
Target Start/End: Complemental strand, 24192209 - 24192050
Alignment:
| Q |
521 |
ttgtcgaaataaaagaaattaaatcgacaactgcaagtttacctctttattgccaatgctaatccttctttcttccaaatcagagagaggaattctcatt |
620 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24192209 |
ttgtcgaaataaaagaaatgaaattgacaactgcaagtttacctctttattgccaatgctaatcattctttcttgcaaatcagagagaggaattctcatt |
24192110 |
T |
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| Q |
621 |
ttagtcagaaaggaaatggcatcggttgaggaacctggtgtgatgactaagtcatctgtt |
680 |
Q |
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| T |
24192109 |
ttagtcagaaaggaaatcgcatcggttgaggaacctggtgtgatgactaagtcatctgtt |
24192050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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