View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20632_high_4 (Length: 280)
Name: NF20632_high_4
Description: NF20632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20632_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 23012731 - 23012459
Alignment:
| Q |
5 |
ttgttttcatgagtaattgaactaaagttcttccaaacaattcttttgtaagttgtctaataattatgaatgaaacgagtatattatacgtaaatttaga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23012731 |
ttgttttcatgagtaattgaactaaagttcttccaaacaattcttttgtaagttgtctaataattatgaatgaaacgagtatattatacgtaaatttaga |
23012632 |
T |
|
| Q |
105 |
atgnnnnnnnntaaaga--gacttaataattaaagatagatagaatatcaatcccccagagttagttactttgattgggcgtggaaggttgatgaaaata |
202 |
Q |
| |
|
||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23012631 |
atgaaaaaaaaaaaaaaaagacttaataattaaagatagatagaataccaatcccccagagttagttactttgattgggcgtggaaggttgatgaaaata |
23012532 |
T |
|
| Q |
203 |
aaaataattaataaccgaatgtggtctataataaagaccatttggacgttccggaacgaccttattttctctg |
275 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23012531 |
aaaataattattaatcgaacgtggtctataataaaaaccatttggacgtctcggaacgaccttattttctctg |
23012459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University