View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20632_low_3 (Length: 347)
Name: NF20632_low_3
Description: NF20632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20632_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 51 - 333
Target Start/End: Original strand, 23012926 - 23013209
Alignment:
| Q |
51 |
acatagcaaatatttattgnnnnnnncaattttcaactttttgataaataatttccaaccattatgattaacagtgacactcttttaagaattgttgttt |
150 |
Q |
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| T |
23012926 |
acatagcaaatatttattgaaaaaaacaattttcaactttttgataaataatttccaaccattatgattaacagtgacactcttttaagaattgttgttt |
23013025 |
T |
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| Q |
151 |
ttcttcttataatgataggagtttctctataaaatggagatacttttatgagacaaatttgtgtcg-aaaatcatgctttcgttgattgatgcatttaat |
249 |
Q |
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| T |
23013026 |
ttcttcttataatgataggagtttctctataaaatggagatacttttatgaaacaaatttgtgtcgaaaaatcatgctttcgttgattgatgcatttaat |
23013125 |
T |
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| Q |
250 |
gttaatatgtaagttaagtcaaagatttcaaagtatcttaaagggattcgtcaatataccaatttgcatctagttgacgtaaat |
333 |
Q |
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| T |
23013126 |
gttaatatgtaagttaagttaaagattttaaagtatcttaaagggattcgtcaatataccaatttgcatctagttgacgtaaat |
23013209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23012899 - 23012934
Alignment:
| Q |
1 |
atagcgacatatattaatgttccacacacatagcaa |
36 |
Q |
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| T |
23012899 |
atagcgacatatattaatattccacacacatagcaa |
23012934 |
T |
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