View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_1 (Length: 878)
Name: NF20633_high_1
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 1 - 859
Target Start/End: Original strand, 31994127 - 31994985
Alignment:
| Q |
1 |
cagttcaagttgagagggaattcaagagatctaaagctgaagaagatattcaaaacttgagaaatttttcaaggtatgactacttgaaaagaagggagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31994127 |
cagttcaagttgagagggaattcaagagatctaaagctgaagaagatattcaaaccttgagaaatttttcaaggtatgagtacttgaaaagaagggagga |
31994226 |
T |
|
| Q |
101 |
aaagaaattgcaacagcttaaggagtatattctagatgaacaatatctatttgaaggagttagggtttcaaaagctgaatactgtgatctcaagcacaag |
200 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994227 |
aaagaaactgcaacaccttaaggagtatattatagatgaacaatatctatttgaaggagttagggtttcaaaagctgaatactgtgatctcaagcacaag |
31994326 |
T |
|
| Q |
201 |
aaagatatatacgatgtagtttcgaagaagagaggcttagagagcgctgaggattataaggagtatataatgccagaagcttatgatgatcatcaacaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994327 |
aaagatatatacgatgtagtttcgaagaagagaggcttagagagcgctgaggattataaggagtatataatgccagaagcttatgatgatcatcaacaaa |
31994426 |
T |
|
| Q |
301 |
gtggcggcgttaatcaggaaaagcggttttcggttgctacgcagcgttacagtactgctgacaaagaagaggcttgggaggaacatcaaattagaaaggc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994427 |
gtggcggcgttaatcaggaaaagcggttttcggttgctacacagcgttacagtactgctgacaaagaagaggcttgggaggaacatcaaattagaaaggc |
31994526 |
T |
|
| Q |
401 |
aaccatgaaatttggttcgaaaaataaaacaaatgtctctgatgattatcagtttgtgtttgaggaccagattgatgttatcaaggagtcagtgatgggt |
500 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31994527 |
aacgatgaaatttggttcgaaaaataaaacaaatgtctctgatgattatcagtttgtgtttgaggatcagattgatgttatcaaggaatcagtgatgggt |
31994626 |
T |
|
| Q |
501 |
ggagataagtttgatcgtcaagaagagattgcatctgaaaaatctcgagcaaagagatcggcttatgaggcacttaaggaggagaggaaaaagctaccta |
600 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994627 |
ggagataagtttgattgtcaagaagagattgcatctgaaaaatctcgagcaaagagatcggcttatgaggcacttaaggaggagaggaaaaagctaccta |
31994726 |
T |
|
| Q |
601 |
tatatccttttaaggatgaatttctccaggctgttcatgatcaccaagtacttgtcattgttggtgaaactggttctggaaaaactacacagattcccca |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994727 |
tatatccttttaaggatgaatttctccaggctgttcatgatcaccaagtacttgtcattgttggtgaaactggttctggaaaaactacacagattcccca |
31994826 |
T |
|
| Q |
701 |
atatcttcacgaagctggttatacgaacgatggaagaatgattgcatgtactcagccacgacgtgttgctgctatgagtgttgctgcccgagtttctcaa |
800 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994827 |
atatcttcacgaagctggttatacgaaggatggaagaatgattgcatgtactcagccacgacgtgttgctgctatgagtgttgctgcccgagtttctcaa |
31994926 |
T |
|
| Q |
801 |
gaaatgggtgttaagctaggacacgaggttggctactccatacgctttgaggattgcac |
859 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31994927 |
gaaatgggtgttaagctaggacacgaggttggctactccatacgctttgaggattgcac |
31994985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 261 - 859
Target Start/End: Original strand, 24008839 - 24009437
Alignment:
| Q |
261 |
gagtatataatgccagaagcttatgatgatcatcaacaaagtggcggcgttaatcaggaaaagcggttttcggttgctacgcagcgttacagt------a |
354 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||| | || |||||||| |||||| ||||||| || |||| ||||||||||| | | |
|
|
| T |
24008839 |
gagtatagaataccagaagcttatgatgatcagcaa------gctggtgttaatcaagaaaagaggttttctgtggctaggcagcgttacaatgatccaa |
24008932 |
T |
|
| Q |
355 |
ctgctgacaaagaagaggcttgggaggaacatcaaattagaaaggcaaccatgaaatttggttcgaaaaataaaacaaatgtctctgatgattatcagtt |
454 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | | |||| ||||||||| ||||| |
|
|
| T |
24008933 |
atgctgagaaagaagaggcttgggaggaacatcaaattagaaaggcaacactgaaatttggttcgaaagataaaagacaagtctgtgatgattaccagtt |
24009032 |
T |
|
| Q |
455 |
tgtgtttgaggaccagattgatgttatcaaggagtcagtgatgggtggagataagtttgatcgtcaagaagagattgcatctgaaaaatctcgagcaaag |
554 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| || |||| ||| | |||||||||| | | ||||| |||||| ||||||||| |||| ||| |
|
|
| T |
24009033 |
tgtgtttgaggaccagattgatttaatcaaggcgtcggtaatggatggtgttaagtttgattatgagaaagaggttgcattagaaaaatctagagctaag |
24009132 |
T |
|
| Q |
555 |
agatcggcttatgaggcacttaaggaggagaggaaaaagctacctatatatccttttaaggatgaatttctccaggctgttcatgatcaccaagtacttg |
654 |
Q |
| |
|
|| || |||| || ||| || ||||||||||||||| |||||| | ||| || || |||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
24009133 |
aggtcagctttagacgcaattcgggaggagaggaaaaaactacctgtctatgctgttcgggataaatttctccaagctgttcatgatcaccaggtacttg |
24009232 |
T |
|
| Q |
655 |
tcattgttggtgaaactggttctggaaaaactacacagattccccaatatcttcacgaagctggttatacgaacgatggaagaatgattgcatgtactca |
754 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
24009233 |
tcattgttggcgaaactggttccggaaaaactacacagattccccaatatcttcacgaagctggttatacgaagcatggaaaaatgattgcatgtactca |
24009332 |
T |
|
| Q |
755 |
gccacgacgtgttgctgctatgagtgttgctgcccgagtttctcaagaaatgggtgttaagctaggacacgaggttggctactccatacgctttgaggat |
854 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24009333 |
gccacggcgtgttgctgctatgagtgttgctgcccgagtttctcaagaaatgggtgttaaactaggacacgaggttggttactccatacgctttgaggat |
24009432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 24008721 - 24008817
Alignment:
| Q |
134 |
agatgaacaatatctatttgaaggagttagggtttcaaaagctgaatactgtgatctcaagcacaagaaagatatatacgatgtagtttcgaagaag |
230 |
Q |
| |
|
|||||| || ||||||||||||||||| | | |||| | | |||||| ||||| ||| ||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
24008721 |
agatgagcattatctatttgaaggagtgaagcgttcagacgtggaataccgtgatttcatgcacaagaaagatatatacaatgtacttgcgaagaag |
24008817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 361 - 859
Target Start/End: Original strand, 15840947 - 15841445
Alignment:
| Q |
361 |
acaaagaagaggcttgggaggaacatcaaattagaaaggcaaccatgaaatttggttcgaaaaataaaacaaatgtctctgatgattatcagtttgtgtt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | | |||||||||||||||| ||||||||| |
|
|
| T |
15840947 |
acaaagaagaggcttgggaggaacatcaaattagaaaggcaaagctgaaatatggttcgaaaaataagcgacaagtctctgatgattatcggtttgtgtt |
15841046 |
T |
|
| Q |
461 |
tgaggaccagattgatgttatcaaggagtcagtgatgggtggagataagtttgatcgtcaagaagagattgcatctgaaaaatctcgagcaaagagatcg |
560 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||| |||| |||| ||||||||||| | | |||||||||||| |||||||| | ||||||||||| |
|
|
| T |
15841047 |
tgaggagcagattgattgtatcaaggcatcagtaatggatggacataagtttgattatggacaagagattgcattgaaaaaatctagcgcaaagagatca |
15841146 |
T |
|
| Q |
561 |
gcttatgaggcacttaaggaggagaggaaaaagctacctatatatccttttaaggatgaatttctccaggctgttcatgatcaccaagtacttgtcattg |
660 |
Q |
| |
|
| || ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
15841147 |
gttttcgaggcacttcaggaggagaggaaaaagctacctatctatccttttcgggatgaatttctccaagctgttcatgatcaccaagtacttgtgattg |
15841246 |
T |
|
| Q |
661 |
ttggtgaaactggttctggaaaaactacacagattccccaatatcttcacgaagctggttatacgaacgatggaagaatgattgcatgtactcagccacg |
760 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || | || ||||||||||| ||||||||||||||||||| |
|
|
| T |
15841247 |
ttggtgaaactggttctgggaaaactacacagattcctcaatatcttcatgaagctggatacataaagcatggaagaatgcttgcatgtactcagccacg |
15841346 |
T |
|
| Q |
761 |
acgtgttgctgctatgagtgttgctgcccgagtttctcaagaaatgggtgttaagctaggacacgaggttggctactccatacgctttgaggattgcac |
859 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
15841347 |
acgtgttgctgctatgagtgttgctgcccgagtttctgaagaaatgggtgttaaactaggacatgaggttggttactccatacgatttgaggattgcac |
15841445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 337
Target Start/End: Original strand, 15840738 - 15840915
Alignment:
| Q |
148 |
tatttgaaggagttagggtttcaaaagctgaatactgtgatctcaagcacaagaaagatatatacgatgtagtttcgaagaagagaggcttagagagcgc |
247 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| | ||||||||| |||||||||||| |||||||| ||| || |||||| | ||| |||||| | || |
|
|
| T |
15840738 |
tatttgaaggagttgagctttcaaaagaagaatgccgtgatctcatgcacaagaaagagatatacgaggtacttgtgaagaaaatagggttagagggtgc |
15840837 |
T |
|
| Q |
248 |
tgaggattataaggagtatataatgccagaagcttatgatgatcatcaacaaagtggcggcgttaatcaggaaaagcggttttcggttgc |
337 |
Q |
| |
|
| |||| | ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| | ||||| ||||| |
|
|
| T |
15840838 |
gg------ataatgcgtatagaatgccagaagcttatgatg---atcaacaaagt---ggcgttaatcaagaaaagagattttctgttgc |
15840915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 740 - 835
Target Start/End: Original strand, 7286458 - 7286553
Alignment:
| Q |
740 |
gattgcatgtactcagccacgacgtgttgctgctatgagtgttgctgcccgagtttctcaagaaatgggtgttaagctaggacacgaggttggcta |
835 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||| | |||||||| |||||||||||||| ||||| |
|
|
| T |
7286458 |
gattgcatgtactcagccacgtcgtgttgctgctatgagtgtggctgctcgagttgctcacgaattaggtgttaaactaggacacgaggtaggcta |
7286553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 648 - 718
Target Start/End: Original strand, 7285994 - 7286064
Alignment:
| Q |
648 |
gtacttgtcattgttggtgaaactggttctggaaaaactacacagattccccaatatcttcacgaagctgg |
718 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
7285994 |
gtacttgtaattgttggtgaaaccggttctggaaagactacacaaattcctcaatatcttcatgaagctgg |
7286064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 646
Target Start/End: Original strand, 7285726 - 7285795
Alignment:
| Q |
577 |
aggaggagaggaaaaagctacctatatatccttttaaggatgaatttctccaggctgttcatgatcacca |
646 |
Q |
| |
|
||||||||||||||||| |||| || ||| ||| | ||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
7285726 |
aggaggagaggaaaaagttacccatttatacttatcgggatgaattgctccaagctgttcatgaccacca |
7285795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University