View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_100 (Length: 327)
Name: NF20633_high_100
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_100 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 91 - 310
Target Start/End: Original strand, 9695388 - 9695607
Alignment:
| Q |
91 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctgtctgatgctgtgagaattttgcttctgtttcacc |
190 |
Q |
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| T |
9695388 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctgtctgatgctgtgagaattttgcttctgtttcacc |
9695487 |
T |
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| Q |
191 |
gaaggaaattaatctaattctcttagttttgattttaaagtcgtttttgtgatttgtgtattttaggataaggctccattcattgctaaggctgataaat |
290 |
Q |
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| T |
9695488 |
gaaggaaattaatctaattctcttagttttgattttaaagtcgtttttgtgatttgtgtattttaggataaggctccattcattgctaaggctgataaat |
9695587 |
T |
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| Q |
291 |
tgaaggaggagtatgagaaa |
310 |
Q |
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| T |
9695588 |
tgaaggaggagtatgagaaa |
9695607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 30440189 - 30440131
Alignment:
| Q |
91 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaa |
149 |
Q |
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| T |
30440189 |
ctaacgtgatttacggtgaatttgaattaggttgggaaagttggtggaaaggaatggaa |
30440131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 30440029 - 30439953
Alignment:
| Q |
233 |
gtttttgtgattt--gtgtattttaggataaggctccattcattgctaaggctgataaattgaaggaggagtatgag |
307 |
Q |
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| T |
30440029 |
gtttttgtgatttatgtgtattttaggataaggctcgattcattgctaagtttgagaagttcaaggaggagtatgag |
30439953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9695298 - 9695332
Alignment:
| Q |
1 |
caacaagtccgttgctgtggtgagatttctgacgc |
35 |
Q |
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| T |
9695298 |
caacaagtccgttgctgtggtgagatttctgacgc |
9695332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 309
Target Start/End: Complemental strand, 15039 - 14884
Alignment:
| Q |
160 |
gatgctgtgagaattttgcttctgtttcaccgaaggaaattaatctaattctc--ttagt--tttgattttaaagtcgtttttgtgattt--gtgtattt |
253 |
Q |
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| T |
15039 |
gatgctgtgagaatttcacctctgtttcactgaagaaaattaatataaatcttaattcgtgttttgattttaaattcatttttgtgatttatgtgtattt |
14940 |
T |
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| Q |
254 |
taggataaggctccattcattgctaaggctgataaattgaaggaggagtatgagaa |
309 |
Q |
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| T |
14939 |
taggataaggctccattcattgctaaggctgagaagttgaaggaggagtatgagaa |
14884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 15111 - 15071
Alignment:
| Q |
105 |
ggtgaatttgaatcaggttgggaaagccggtggaaaggaat |
145 |
Q |
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| T |
15111 |
ggtgaatttgaattaggttgggaaagctggtggaaaagaat |
15071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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