View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_103 (Length: 317)
Name: NF20633_high_103
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_103 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 53615805 - 53616058
Alignment:
| Q |
1 |
gttttggccttaatatttgaagtaaaatacctaatttttgaagggggaaaaagaaggaccaaaatgaggtttacctgatgttttagattgtttttcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615805 |
gttttggccttaatatttgaagtaaaatacctactttttgaagggggaaaaagaaggaccaaaatgaggtttacctgatgttttagattgtttttcaaga |
53615904 |
T |
|
| Q |
101 |
ccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctttaccttagagaatgtaccttctcctattgtcctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615905 |
ccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctttaccttagagaatgtaccttctcctattgtcctgcc |
53616004 |
T |
|
| Q |
201 |
aagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53616005 |
aagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
53616058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University