View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_107 (Length: 312)

Name: NF20633_high_107
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_107
NF20633_high_107
[»] chr2 (7 HSPs)
chr2 (14-295)||(12006818-12007104)
chr2 (14-167)||(12019598-12019750)
chr2 (74-191)||(11988104-11988220)
chr2 (57-167)||(8580316-8580426)
chr2 (136-191)||(9061870-9061925)
chr2 (140-194)||(9295358-9295413)
chr2 (140-177)||(9284933-9284970)
[»] chr1 (5 HSPs)
chr1 (17-191)||(29454036-29454209)
chr1 (14-184)||(29444036-29444205)
chr1 (17-191)||(29422520-29422687)
chr1 (50-123)||(29468564-29468637)
chr1 (50-123)||(29473678-29473751)
[»] chr7 (1 HSPs)
chr7 (128-164)||(45242872-45242908)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 12007104 - 12006818
Alignment:
Q  14 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12007104 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacatagagttggagtaatttcattaaaggtaaatttctacagaacaat 12007005  T
Q  114 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacattttgaaataagtttgacaaaataataataatttcagactgtggatct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12007004 attcttatccttaaatacacagataccacaacagggtggaataatctcaacattttgaaataagtttgacaaaataataataatttcggactgtggatct 12006905  T
Q  214 caactaatgaaggaaaagaaaagaccaactgatatcaatcaatattatttctttaa-----cttacttcttaagtaagggaatcctg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  12006904 caactaatgaaggaaaagaaaagaccaactgatatcaatcaatattatttctttaacttaacttacttcttaagtaagggaatcctg 12006818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 12019750 - 12019598
Alignment:
Q  14 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaat 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||  ||||||||||||||| ||||||    
T  12019750 aatatcacaaatgaatagtgataaataatataaatattttgaaaggaattatacatagatttggagtaatt-cattgcaggtaaatttctacacaacaat 12019652  T
Q  114 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12019651 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacatt 12019598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 11988220 - 11988104
Alignment:
Q  74 ttggagtaatttcattaaaggtaaatttcta-cagaacaatattcttatccttaaatacacagataccacaacagggtggaatagtctcaacattttgaa 172  Q
    ||||||| ||||||||  | | ||||||||| || |||||  ||||||||||||  |||||||||||||||||||||| |||||||| |||||||| |||    
T  11988220 ttggagttatttcattgcaagaaaatttctaacacaacaacgttcttatcctta--tacacagataccacaacagggtagaatagtcacaacatttcgaa 11988123  T
Q  173 ataagtttgacaaaataat 191  Q
    |||||||||||| ||||||    
T  11988122 ataagtttgacacaataat 11988104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 8580426 - 8580316
Alignment:
Q  57 aggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaatattcttatccttaaatacacagataccacaacagggtggaata 156  Q
    ||||||| || ||||  |||||||||||||||   ||| ||||||||| | |||||| ||||| |||||| | ||||| |||||||||| ||||| ||||    
T  8580426 aggaattgtaaataactttggagtaatttcatggtaggcaaatttctaaacaacaattttcttctccttatacacacaaataccacaacggggtgcaata 8580327  T
Q  157 gtctcaacatt 167  Q
    |||||||||||    
T  8580326 gtctcaacatt 8580316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 9061925 - 9061870
Alignment:
Q  136 ataccacaacagggtggaatagtctcaacattttgaaataagtttgacaaaataat 191  Q
    |||||||| ||||||||||||||||| |||||  |||||||||| | |||||||||    
T  9061925 ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataat 9061870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 9295413 - 9295358
Alignment:
Q  140 cacaacagggtggaatagtctcaacattttgaaataagtttg-acaaaataataat 194  Q
    ||||||||||||||||||||||||||||  |||| ||| ||| |||||||||||||    
T  9295413 cacaacagggtggaatagtctcaacattcagaaagaagcttgtacaaaataataat 9295358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 9284970 - 9284933
Alignment:
Q  140 cacaacagggtggaatagtctcaacattttgaaataag 177  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  9284970 cacaacagggtggaatagtctcaacattcagaaataag 9284933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 29454209 - 29454036
Alignment:
Q  17 atcacagatgaatagtgataaataatataaatattttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaatatt 116  Q
    |||||| | ||||||||||||| || |||||||||||||||||| || |||||| | || |||||||||||||  ||| ||||||||||| |||||| ||    
T  29454209 atcacaaaagaatagtgataaaaaa-ataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacacaacaatgtt 29454111  T
Q  117 cttatccttaaatacacagataccacaacagggtggaatagtctcaacattttgaaataagtttgacaaaataat 191  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  29454110 cttatccttaaatacatagataccacaacagggtggaatagactcaacattccgaaataagtttgacaaaataat 29454036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 29444205 - 29444036
Alignment:
Q  14 aatatcacagatgaatagtgataaataatataaatattttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaat 113  Q
    ||||||||| | |||||||||| || || |||||||||||||||||| ||||||||| | || |||||| ||||||  ||| ||||||||||| ||||||    
T  29444205 aatatcacaaaagaatagtgatcaaaaa-ataaatattttgaaaggacttatacatagattttgagtaaattcattgcaggcaaatttctacacaacaat 29444107  T
Q  114 attcttatccttaaatacacagataccacaacagggtggaatagtctcaacattttgaaataagtttgaca 184  Q
     || ||||||||||||||| |||||| || ||| ||| ||| ||||||||||||| |||||||||||||||    
T  29444106 gtttttatccttaaatacatagatacaacgacaaggttgaacagtctcaacatttcgaaataagtttgaca 29444036  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 29422520 - 29422687
Alignment:
Q  17 atcacagatgaatagtgataaataatataaatattttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaatatt 116  Q
    |||||| | ||||||||||||| || |||||||||||||||||| || |||||| | || |||||||||||||  ||| ||||||||||  |||||| ||    
T  29422520 atcacaaaagaatagtgataaaaaa-ataaatattttgaaaggacttgtacatagattttgagtaatttcattgcaggcaaatttctacccaacaatgtt 29422618  T
Q  117 cttatccttaaatacacagataccacaacagggtggaatagtctcaacattttgaaataagtttgacaaaataat 191  Q
    |||||||      ||| ||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  29422619 cttatcc------acatagataccacgacagggttgaatagtctcaacattccgaaataagtttgacaaaataat 29422687  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29468637 - 29468564
Alignment:
Q  50 ttttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaatattcttatcc 123  Q
    |||||||| |||||||||||| | ||||| |||| |||||  | | ||||||||||| |||||| |||||||||    
T  29468637 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 29468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29473751 - 29473678
Alignment:
Q  50 ttttgaaaggaattatacataaacttggagtaatttcattaaaggtaaatttctacagaacaatattcttatcc 123  Q
    |||||||| |||||||||||| | ||||| |||| |||||  | | ||||||||||| |||||| |||||||||    
T  29473751 ttttgaaatgaattatacatagatttggaataatctcattgcatgcaaatttctacacaacaatgttcttatcc 29473678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 45242872 - 45242908
Alignment:
Q  128 atacacagataccacaacagggtggaatagtctcaac 164  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  45242872 atacacggataccacagcagggtggaatagtctcaac 45242908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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