View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_111 (Length: 307)
Name: NF20633_high_111
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_111 |
 | |
|
| [»] scaffold0736 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 45480974 - 45480764
Alignment:
| Q |
97 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45480974 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
45480875 |
T |
|
| Q |
197 |
ttaactcaaaatctcatcaaaatat-------------gcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
283 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45480874 |
ttaactcaaaatctcatcaaaatatgcttgtaaaatatgcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
45480775 |
T |
|
| Q |
284 |
atggtcatttt |
294 |
Q |
| |
|
||||||||||| |
|
|
| T |
45480774 |
atggtcatttt |
45480764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 45481064 - 45481034
Alignment:
| Q |
7 |
aagaaaataaatcagtaatgtgattagatgc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45481064 |
aagaaaataaatcagtaatgtgattagatgc |
45481034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0736
Description:
Target: scaffold0736; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 5847 - 5637
Alignment:
| Q |
97 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaatttttcatctaaatcagttcatagttattaaat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5847 |
ttctcaatgaaatgtatgtacatataatatatggtgtgaattataagatgactattactgttagaaaattttcatctaaatcagttcatagttattaaat |
5748 |
T |
|
| Q |
197 |
ttaactcaaaatctcatcaaaatat-------------gcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
283 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5747 |
ttaactcaaaatctcatcaaaatatgcttgtaaaatatgcttagaaaaagtgttcaaaataaggccaagcactatgttgacatttcatgaagattctata |
5648 |
T |
|
| Q |
284 |
atggtcatttt |
294 |
Q |
| |
|
||||||||||| |
|
|
| T |
5647 |
atggtcatttt |
5637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0736; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 5937 - 5907
Alignment:
| Q |
7 |
aagaaaataaatcagtaatgtgattagatgc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5937 |
aagaaaataaatcagtaatgtgattagatgc |
5907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University