View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_112 (Length: 305)
Name: NF20633_high_112
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_112 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 35802083 - 35801801
Alignment:
| Q |
14 |
gagagtggttggccttcatctgacgggacagtaacttcacctgataatgcaatgctagaacttacagttacagcacacttggttcaattcaacatgtgaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35802083 |
gagagtggttggccttcatctgacgggacagtaacttcacctgataatgcaatgctagaacttacagttacagcacacttggttcaattcaacatgtgaa |
35801984 |
T |
|
| Q |
114 |
gagaaggacaccaaaaaggcttcgaaaatttgagaaatttctttaaagaatctacattatttacaaattatgatttgctgtgtttattttttaagcaaca |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35801983 |
gagaaggacaccaaaaaggcttggaaaatttgtgaaatttctttaaagaatctacattatttacaaattatgatttgctgtgtttattttttaagcaaca |
35801884 |
T |
|
| Q |
214 |
atgatgttattattttcaacaacacaacatgtattatcacattagataagtacgtcttttataaagatagtataccgacattc |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35801883 |
atgatgttattattttcaacaacacatcatatattatcacattagataagtacgtcttttataaagatagtatactgacattc |
35801801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 35765472 - 35765423
Alignment:
| Q |
17 |
agtggttggccttcatctgacgggacagtaacttcacctgataatgcaat |
66 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35765472 |
agtggttgctcttcatctggtgggacagtaacttcacttgataatgcaat |
35765423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University