View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_117 (Length: 300)
Name: NF20633_high_117
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_117 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 16404790 - 16404579
Alignment:
| Q |
14 |
actataccatttttctattaaataacccttagatccaaaaataattgttttggtaaatctcgagtttgatctttgattaaaataatcttttttagatttt |
113 |
Q |
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| T |
16404790 |
actataccatttttctattaaatacctcttagatccaaaaataattgtcttggtaaatctcgagtttgatctttgattaaaataatcttttttagatttt |
16404691 |
T |
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| Q |
114 |
acctatatttttgaacaagctctaaattatcaaagaatagttgaaaatttatgattaactccaaaaactgtttactcacaaaaataataatttggtgcct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
16404690 |
acctatatttttgaacaagctctaaattatcaaagaatagttgaaaatttatgattaactccaaaaactgtttactcacaaaaataataattt-gtgtct |
16404592 |
T |
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| Q |
214 |
ctatttgtcaatt |
226 |
Q |
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||||||||||||| |
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| T |
16404591 |
ctatttgtcaatt |
16404579 |
T |
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