View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_118 (Length: 299)

Name: NF20633_high_118
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_118
NF20633_high_118
[»] chr1 (1 HSPs)
chr1 (16-296)||(25683399-25683692)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 25683399 - 25683692
Alignment:
Q  16 catatgacaaaaccatttatgcttgctggctttggtcaatgtaacaaatttattaaataattgacacaaatccatgtcttgcgtacgtgagtgcatgaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25683399 catatgacaaaaccatttatgcttgctggctttggtcaatgtaacaaatttattaaataattgacacaaatccatgtcttgcgtacgtgagtgcatgaac 25683498  T
Q  116 catgatgcaatttctttccaaaataaataacaatcaatctaatttggtgaagattcaactcatatctaacaaggatatgaattcaaattccgcggtcaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25683499 catgatgcaatttctttccaaaataaataacaatcaatctaagttggtgaagattcaactcatatctaacaaggatatgaattcaaattccgcggtcaac 25683598  T
Q  216 agggtcaacgg--------------ccctgttagtgattaatatgtaagtacttctagaagctctcttcgaatttaaagactttctctgatgctg 296  Q
    |||||||| ||              || |||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||| |||||||    
T  25683599 agggtcaatggaatgtcggtgttaaccttgttagtgattaatatgtaagtacttc-ggaagttctcttcgagtttaaagactttctcggatgctg 25683692  T

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