View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_121 (Length: 293)
Name: NF20633_high_121
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_121 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 26718823 - 26718695
Alignment:
| Q |
157 |
agcaattttatgattcctgcttctgctttcttcttcattatttatccnnnnnnnccatcaatctcacttcaatggctcattgcaacgacccttatttcct |
256 |
Q |
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| T |
26718823 |
agcaattttatgattcctgcttctgctttcttcttcattctttatcctttttttccatcaatctcacttcaatggctcattgcaacgacccttatttcct |
26718724 |
T |
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| Q |
257 |
gcattcttcctatcatcccggcgttatct |
285 |
Q |
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| T |
26718723 |
gcattcttcctatcatcccggcgttatct |
26718695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 26718901 - 26718822
Alignment:
| Q |
18 |
actttgacatcacataatattatttatattatgtattttgatgaagtatcactttgtaattcagttagcacattattcag |
97 |
Q |
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| T |
26718901 |
actttgacatcacataatattatttatattatgtattttgatgaagtatcactttgtaattcagttagcacattattcag |
26718822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 7241348 - 7241311
Alignment:
| Q |
54 |
tttgatgaagtatcactttgtaattcagttagcacatt |
91 |
Q |
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| T |
7241348 |
tttgatgaagtaccactttgtaattcatttagcacatt |
7241311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 45275768 - 45275731
Alignment:
| Q |
54 |
tttgatgaagtatcactttgtaattcagttagcacatt |
91 |
Q |
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| T |
45275768 |
tttgatgaagtaccactttgtaattcaattagcacatt |
45275731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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