View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_123 (Length: 287)
Name: NF20633_high_123
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_123 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 47713013 - 47712752
Alignment:
| Q |
8 |
agagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgat |
107 |
Q |
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| T |
47713013 |
agagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcattttgctgat |
47712914 |
T |
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| Q |
108 |
tgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgataggg |
207 |
Q |
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| T |
47712913 |
tgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgataggg |
47712814 |
T |
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| Q |
208 |
cgacattgttgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtg |
269 |
Q |
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| T |
47712813 |
cgacattgttgtgtgagagtatcgcgaagaggatttttcctagggaggagtatgaaggtgtg |
47712752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 19785473 - 19785734
Alignment:
| Q |
8 |
agagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgat |
107 |
Q |
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| T |
19785473 |
agagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgat |
19785572 |
T |
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| Q |
108 |
tgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgataggg |
207 |
Q |
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| T |
19785573 |
tgtttgaagaaggatcttcagtttttgaaatctgggttgcccaataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgatcgat |
19785672 |
T |
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| Q |
208 |
cgacattgttgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtg |
269 |
Q |
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| T |
19785673 |
cgactcttctgtgtgagagtattgcaaagaggatcttccctcgggaggaatatgaaggtgtg |
19785734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 19796114 - 19795853
Alignment:
| Q |
8 |
agagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgat |
107 |
Q |
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| T |
19796114 |
agagaagaggattgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgat |
19796015 |
T |
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| Q |
108 |
tgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgataggg |
207 |
Q |
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| T |
19796014 |
tgtttgaagaaggatctcgagtttttgaaatccgggtcgcccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcggt |
19795915 |
T |
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| Q |
208 |
cgacattgttgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtg |
269 |
Q |
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| || | ||||||||| || || |||| ||| || |||||||||||||||||||||||| |
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| T |
19795914 |
caactcttctgtgtgagaccattgccaagaagatcttccctagggaggagtatgaaggtgtg |
19795853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 15835421 - 15835160
Alignment:
| Q |
8 |
agagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgat |
107 |
Q |
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|||||||| ||||| |||||||||||||||||||| || || |||||||||||| |||||||||| |||||| ||||||| ||| |||||||| ||||| |
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| T |
15835421 |
agagaagaggattgccttggctaagaagcttgttgatcgatacaatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgat |
15835322 |
T |
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| Q |
108 |
tgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgataggg |
207 |
Q |
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| T |
15835321 |
tgtttgaagaaggatcttgagtttttgaaatctgggtcacccagaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgatcggt |
15835222 |
T |
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| Q |
208 |
cgacattgttgtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtg |
269 |
Q |
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| || | ||||||||| || || |||||||| || ||| ||||||| |||||||||||| |
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| T |
15835221 |
caactcttctgtgtgagaccattgccaagaggatattccctcgggaggaatatgaaggtgtg |
15835160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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