View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_high_124 (Length: 284)

Name: NF20633_high_124
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_high_124
NF20633_high_124
[»] chr2 (39 HSPs)
chr2 (17-237)||(40829545-40829773)
chr2 (65-222)||(6224208-6224363)
chr2 (65-214)||(7027319-7027466)
chr2 (80-222)||(25288594-25288734)
chr2 (110-222)||(33136075-33136187)
chr2 (65-214)||(18177687-18177834)
chr2 (70-214)||(26789206-26789348)
chr2 (116-228)||(18727620-18727732)
chr2 (113-221)||(38295698-38295806)
chr2 (65-214)||(28739933-28740080)
chr2 (65-214)||(28845001-28845148)
chr2 (99-208)||(35404312-35404421)
chr2 (69-220)||(2308695-2308844)
chr2 (112-200)||(15224242-15224330)
chr2 (93-208)||(18899921-18900036)
chr2 (99-197)||(3991772-3991870)
chr2 (65-214)||(10657846-10657993)
chr2 (110-197)||(11153354-11153441)
chr2 (65-219)||(13833053-13833205)
chr2 (100-197)||(19948538-19948635)
chr2 (70-216)||(31847203-31847348)
chr2 (101-208)||(3575291-3575398)
chr2 (128-222)||(43078967-43079061)
chr2 (110-215)||(379389-379494)
chr2 (99-195)||(15926377-15926474)
chr2 (100-197)||(38413458-38413555)
chr2 (110-197)||(41978847-41978934)
chr2 (65-165)||(214945-215043)
chr2 (121-197)||(13898497-13898573)
chr2 (121-197)||(14039114-14039190)
chr2 (110-232)||(24025858-24025980)
chr2 (99-197)||(33262852-33262950)
chr2 (128-214)||(43825317-43825403)
chr2 (65-196)||(34342205-34342334)
chr2 (99-160)||(1833747-1833808)
chr2 (111-195)||(32293923-32294008)
chr2 (136-197)||(45161137-45161198)
chr2 (101-195)||(32242211-32242306)
chr2 (100-154)||(12877686-12877740)
[»] chr8 (34 HSPs)
chr8 (65-235)||(8029806-8029974)
chr8 (65-220)||(31625724-31625877)
chr8 (70-222)||(32497962-32498112)
chr8 (65-208)||(10294983-10295124)
chr8 (112-228)||(27878607-27878723)
chr8 (112-228)||(28018788-28018904)
chr8 (65-214)||(9288132-9288279)
chr8 (65-214)||(14781770-14781917)
chr8 (70-222)||(26856526-26856676)
chr8 (65-228)||(6388094-6388259)
chr8 (65-179)||(12522529-12522641)
chr8 (65-199)||(19717527-19717659)
chr8 (110-208)||(41393966-41394064)
chr8 (96-214)||(44725429-44725547)
chr8 (112-208)||(19484227-19484323)
chr8 (65-214)||(18958365-18958512)
chr8 (100-214)||(43166314-43166428)
chr8 (70-214)||(18305614-18305756)
chr8 (100-217)||(26620329-26620446)
chr8 (112-228)||(27915551-27915667)
chr8 (112-228)||(27961970-27962086)
chr8 (65-214)||(43308146-43308293)
chr8 (70-214)||(42305242-42305384)
chr8 (96-222)||(16364151-16364277)
chr8 (111-177)||(24082223-24082289)
chr8 (99-195)||(37131291-37131388)
chr8 (145-219)||(12522415-12522489)
chr8 (110-195)||(17234724-17234810)
chr8 (110-214)||(7466780-7466884)
chr8 (110-197)||(33177851-33177938)
chr8 (65-214)||(39467156-39467303)
chr8 (136-197)||(28317075-28317136)
chr8 (100-195)||(24067106-24067202)
chr8 (168-228)||(42423258-42423318)
[»] chr3 (37 HSPs)
chr3 (65-229)||(4962703-4962865)
chr3 (110-228)||(16155174-16155292)
chr3 (65-222)||(20833311-20833466)
chr3 (70-208)||(21386477-21386613)
chr3 (65-222)||(48379564-48379719)
chr3 (65-224)||(26107743-26107900)
chr3 (75-222)||(50902940-50903085)
chr3 (65-222)||(51737321-51737473)
chr3 (78-228)||(33693236-33693384)
chr3 (65-222)||(7437550-7437705)
chr3 (65-222)||(44905486-44905641)
chr3 (65-222)||(52810772-52810927)
chr3 (65-222)||(54629265-54629420)
chr3 (93-208)||(49296109-49296224)
chr3 (93-215)||(8598652-8598774)
chr3 (65-214)||(37455261-37455408)
chr3 (70-214)||(36673791-36673933)
chr3 (99-228)||(49458357-49458486)
chr3 (65-199)||(52617626-52617758)
chr3 (70-214)||(23753028-23753170)
chr3 (70-208)||(39038509-39038645)
chr3 (70-236)||(7665563-7665726)
chr3 (65-185)||(17946642-17946760)
chr3 (70-214)||(31645900-31646042)
chr3 (112-208)||(22489477-22489573)
chr3 (92-176)||(43172919-43173003)
chr3 (93-208)||(53835955-53836070)
chr3 (65-208)||(18750057-18750198)
chr3 (75-214)||(40897555-40897692)
chr3 (70-224)||(50761730-50761881)
chr3 (100-195)||(25049871-25049967)
chr3 (100-197)||(9818568-9818665)
chr3 (93-196)||(42736300-42736403)
chr3 (128-197)||(47467415-47467484)
chr3 (128-214)||(34483737-34483823)
chr3 (100-197)||(37832572-37832669)
chr3 (100-197)||(40064278-40064375)
[»] chr1 (49 HSPs)
chr1 (65-230)||(28403916-28404079)
chr1 (65-222)||(5494726-5494881)
chr1 (93-228)||(47371547-47371682)
chr1 (65-214)||(45272982-45273129)
chr1 (101-236)||(32760063-32760198)
chr1 (114-230)||(42304470-42304586)
chr1 (65-214)||(6312991-6313138)
chr1 (65-214)||(25612507-25612654)
chr1 (65-214)||(29396070-29396217)
chr1 (110-208)||(35177202-35177300)
chr1 (65-222)||(46328401-46328556)
chr1 (65-192)||(49236974-49237099)
chr1 (93-215)||(4005081-4005203)
chr1 (69-230)||(25253485-25253644)
chr1 (65-214)||(51702010-51702157)
chr1 (112-212)||(1243294-1243394)
chr1 (65-228)||(3583528-3583689)
chr1 (110-222)||(49231465-49231577)
chr1 (93-215)||(9192038-9192160)
chr1 (65-214)||(15834670-15834817)
chr1 (93-215)||(51106906-51107028)
chr1 (65-177)||(9322181-9322291)
chr1 (112-208)||(41353454-41353550)
chr1 (112-207)||(5209361-5209456)
chr1 (93-208)||(8147331-8147446)
chr1 (70-195)||(52182319-52182443)
chr1 (100-214)||(18798900-18799014)
chr1 (65-222)||(38535774-38535929)
chr1 (65-222)||(38557992-38558147)
chr1 (112-229)||(48966462-48966579)
chr1 (93-195)||(49971599-49971703)
chr1 (65-199)||(8140884-8141016)
chr1 (93-228)||(15927313-15927448)
chr1 (93-208)||(26757629-26757744)
chr1 (112-217)||(49453043-49453149)
chr1 (70-214)||(25830885-25831027)
chr1 (112-208)||(11579092-11579188)
chr1 (101-214)||(48177078-48177192)
chr1 (100-197)||(7798521-7798618)
chr1 (110-197)||(33886863-33886950)
chr1 (110-197)||(33957300-33957387)
chr1 (100-191)||(3593267-3593358)
chr1 (121-197)||(34751575-34751651)
chr1 (101-195)||(1108374-1108468)
chr1 (110-186)||(27257872-27257948)
chr1 (110-224)||(51901983-51902097)
chr1 (100-177)||(18954486-18954563)
chr1 (128-197)||(34019168-34019237)
chr1 (142-214)||(29219611-29219683)
[»] chr7 (45 HSPs)
chr7 (70-222)||(8675750-8675901)
chr7 (65-222)||(29893386-29893541)
chr7 (65-214)||(29614439-29614586)
chr7 (65-224)||(7993571-7993728)
chr7 (65-214)||(510060-510207)
chr7 (65-214)||(28342725-28342872)
chr7 (65-214)||(33891878-33892025)
chr7 (65-222)||(37328321-37328476)
chr7 (65-214)||(39784521-39784668)
chr7 (100-222)||(48136864-48136986)
chr7 (70-221)||(12740789-12740938)
chr7 (65-220)||(42610584-42610737)
chr7 (100-222)||(37972513-37972635)
chr7 (65-222)||(41827742-41827897)
chr7 (70-199)||(44256414-44256541)
chr7 (72-220)||(29585935-29586081)
chr7 (65-214)||(18838824-18838971)
chr7 (65-214)||(23101705-23101852)
chr7 (93-212)||(4639862-4639981)
chr7 (93-208)||(14741419-14741534)
chr7 (65-214)||(39028501-39028648)
chr7 (65-214)||(40460358-40460505)
chr7 (65-222)||(44121569-44121724)
chr7 (65-177)||(32884185-32884295)
chr7 (71-222)||(21486115-21486264)
chr7 (65-167)||(43172121-43172221)
chr7 (65-214)||(3023348-3023495)
chr7 (65-214)||(28034492-28034639)
chr7 (93-200)||(16709428-16709533)
chr7 (93-200)||(17683664-17683769)
chr7 (111-195)||(11735194-11735279)
chr7 (123-220)||(30823108-30823205)
chr7 (142-222)||(21067869-21067949)
chr7 (111-230)||(21024077-21024196)
chr7 (70-186)||(27148817-27148931)
chr7 (65-157)||(33383088-33383178)
chr7 (100-197)||(34656605-34656702)
chr7 (98-186)||(33497107-33497195)
chr7 (110-197)||(14732298-14732385)
chr7 (121-208)||(23017013-23017100)
chr7 (93-195)||(26201794-26201897)
chr7 (100-197)||(35313557-35313654)
chr7 (128-214)||(47067185-47067271)
chr7 (138-197)||(19594248-19594307)
chr7 (112-197)||(6268513-6268598)
[»] chr4 (47 HSPs)
chr4 (65-222)||(5800380-5800535)
chr4 (70-220)||(49501165-49501313)
chr4 (70-220)||(49507230-49507378)
chr4 (65-222)||(49834464-49834619)
chr4 (65-222)||(28484311-28484467)
chr4 (100-230)||(46286709-46286839)
chr4 (65-214)||(5441818-5441965)
chr4 (112-222)||(50517205-50517315)
chr4 (75-218)||(32322492-32322634)
chr4 (65-208)||(29510061-29510202)
chr4 (65-199)||(54341558-54341690)
chr4 (112-230)||(23671347-23671465)
chr4 (65-214)||(27768480-27768627)
chr4 (65-214)||(48261494-48261641)
chr4 (65-214)||(51321272-51321419)
chr4 (93-208)||(29469156-29469271)
chr4 (112-230)||(24966492-24966610)
chr4 (100-222)||(29855965-29856087)
chr4 (96-214)||(37828068-37828186)
chr4 (112-196)||(26491130-26491214)
chr4 (93-208)||(8084202-8084317)
chr4 (70-208)||(41725534-41725670)
chr4 (99-197)||(51967276-51967374)
chr4 (65-222)||(37916217-37916360)
chr4 (70-214)||(50018613-50018755)
chr4 (112-208)||(42937406-42937502)
chr4 (65-214)||(30966981-30967128)
chr4 (112-177)||(33138812-33138877)
chr4 (69-195)||(871781-871905)
chr4 (65-198)||(23987613-23987743)
chr4 (110-197)||(9972783-9972870)
chr4 (65-179)||(32889863-32889975)
chr4 (101-236)||(55165526-55165670)
chr4 (110-196)||(23170738-23170824)
chr4 (100-197)||(6487324-6487421)
chr4 (70-214)||(32683666-32683807)
chr4 (100-197)||(40162789-40162886)
chr4 (100-197)||(54561219-54561316)
chr4 (100-219)||(8563342-8563461)
chr4 (70-208)||(54853120-54853256)
chr4 (100-196)||(56423982-56424078)
chr4 (99-197)||(26448630-26448728)
chr4 (142-196)||(29966401-29966455)
chr4 (101-159)||(40487703-40487761)
chr4 (100-197)||(14334394-14334491)
chr4 (110-159)||(41470370-41470419)
chr4 (112-177)||(46862941-46863006)
[»] scaffold0110 (1 HSPs)
scaffold0110 (70-222)||(39266-39416)
[»] chr5 (26 HSPs)
chr5 (65-230)||(5651158-5651321)
chr5 (70-214)||(37014275-37014417)
chr5 (65-222)||(4240097-4240252)
chr5 (93-195)||(16548850-16548953)
chr5 (93-215)||(7125151-7125273)
chr5 (65-214)||(39852786-39852933)
chr5 (65-214)||(13926347-13926494)
chr5 (93-208)||(28623160-28623275)
chr5 (100-208)||(1460791-1460899)
chr5 (65-230)||(29758673-29758834)
chr5 (65-199)||(4549912-4550044)
chr5 (65-199)||(5949528-5949659)
chr5 (65-214)||(13999733-13999880)
chr5 (65-214)||(40013344-40013491)
chr5 (100-197)||(2675078-2675175)
chr5 (70-218)||(29716774-29716920)
chr5 (121-197)||(21238763-21238839)
chr5 (65-230)||(34218436-34218590)
chr5 (122-208)||(37798113-37798199)
chr5 (110-219)||(33892824-33892933)
chr5 (99-191)||(34909591-34909683)
chr5 (92-165)||(21489892-21489965)
chr5 (139-214)||(1151930-1152005)
chr5 (110-177)||(25868809-25868876)
chr5 (128-230)||(31913526-31913628)
chr5 (101-230)||(16497707-16497836)
[»] scaffold1128 (1 HSPs)
scaffold1128 (65-217)||(888-1038)
[»] chr6 (25 HSPs)
chr6 (65-229)||(16438673-16438835)
chr6 (65-214)||(31896052-31896199)
chr6 (112-228)||(2606907-2607023)
chr6 (65-208)||(31067847-31067988)
chr6 (93-215)||(1463656-1463778)
chr6 (93-215)||(6788093-6788215)
chr6 (99-192)||(31535068-31535161)
chr6 (76-208)||(31975644-31975774)
chr6 (65-208)||(4200096-4200237)
chr6 (112-215)||(3000252-3000355)
chr6 (65-199)||(7497513-7497645)
chr6 (65-199)||(14262090-14262222)
chr6 (93-208)||(10113772-10113887)
chr6 (100-175)||(28900863-28900938)
chr6 (65-199)||(34758733-34758865)
chr6 (65-214)||(30384703-30384850)
chr6 (99-197)||(31996251-31996349)
chr6 (100-195)||(8779586-8779681)
chr6 (101-186)||(13461374-13461459)
chr6 (110-196)||(21199564-21199650)
chr6 (140-214)||(34773873-34773947)
chr6 (100-177)||(7835387-7835464)
chr6 (121-230)||(12028996-12029105)
chr6 (127-194)||(21010883-21010950)
chr6 (181-230)||(33641267-33641316)
[»] scaffold0042 (1 HSPs)
scaffold0042 (65-222)||(57695-57850)
[»] scaffold0013 (1 HSPs)
scaffold0013 (65-199)||(89247-89379)
[»] scaffold0543 (1 HSPs)
scaffold0543 (65-214)||(10940-11087)
[»] scaffold1504 (1 HSPs)
scaffold1504 (70-199)||(1287-1414)
[»] scaffold0573 (1 HSPs)
scaffold0573 (100-175)||(8856-8931)
[»] scaffold0383 (1 HSPs)
scaffold0383 (128-198)||(16684-16754)
[»] scaffold0152 (2 HSPs)
scaffold0152 (128-198)||(20920-20990)
scaffold0152 (128-198)||(28811-28881)
[»] scaffold0421 (1 HSPs)
scaffold0421 (128-197)||(1727-1796)
[»] scaffold0246 (2 HSPs)
scaffold0246 (100-219)||(1367-1486)
scaffold0246 (101-159)||(25642-25700)
[»] scaffold0347 (1 HSPs)
scaffold0347 (122-194)||(15132-15204)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 40829545 - 40829773
Alignment:
Q  17 aacttccattctaatagtgtagactagctgcgacaatatcatccat--------gctccgtaaattgagtgttaactctccgaaagtttatcgagtctac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||| |||||| |||||||||    
T  40829545 aacttccattctaatagtgtagactagctgcgacaatatcatccatcaatgaatgttccgtaaattgagtgttaactctccgagagtttaccgagtctac 40829644  T
Q  109 atttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  40829645 atttttaggtatcaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatagaaaggtttgacgaatttgaccgagttaacactcaataaactc 40829744  T
Q  209 atgtaaactcgaccaagtttacatctaac 237  Q
    |||||||||||||| ||||||||||||||    
T  40829745 atgtaaactcgaccgagtttacatctaac 40829773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 6224363 - 6224208
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||| |||||||||||  |||||||||||| ||  |||| |||||||||||| ||| |||    
T  6224363 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacgtttttaggtacacaaatcgtgttaactcttaggtgaactcggtttctagtaaaat 6224266  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||||||||  |||||||||||||||||||||    
T  6224265 cggaaggtttaacgagtttgactgagttaacactcggtaaactcatgtaaactcgacc 6224208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 7027319 - 7027466
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  7027319 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 7027416  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     ||||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  7027417 tgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 7027466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 25288594 - 25288734
Alignment:
Q  80 ttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacga 179  Q
    |||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||||| ||||||| |||     
T  25288594 ttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggaaggtttaacgg 25288691  T
Q  180 atttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
     |||||  |||||||||||| |||||||| |||||||||||||    
T  25288692 gtttgattgagttaacactcgataaactcgtgtaaactcgacc 25288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 33136075 - 33136187
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    ||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||| ||||||| |||||||||||  |||||||||||  ||||||      
T  33136075 tttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtataatcggaaggtttaacgaatttgactaagttaacactcggtaaacttg 33136174  T
Q  210 tgtaaactcgacc 222  Q
    |||||||||||||    
T  33136175 tgtaaactcgacc 33136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 18177687 - 18177834
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||| ||| ||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  18177687 tccgtaaatcgagtgttaaatcttcgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18177784  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | || |||| |||| |||||| ||||||||||||  ||||||| |||||    
T  18177785 tggaaagtttaacgagtttgacagagttaacactcggtaaactcgtgtaa 18177834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 26789206 - 26789348
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||| ||||||| |  |||||||||  |||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||    
T  26789206 aaatcgagtgttaaatctccgaga--ttatcgagttgacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaa 26789303  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| |||| |||||| |||||||||||  |||||||| |||||    
T  26789304 ggtttaacgagtttgactgagttaacacttgataaactcgtgtaa 26789348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 18727732 - 18727620
Alignment:
Q  116 ggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaa 215  Q
    |||||||||| |||||||| |||||||||||||||  |||||||| |||| ||| ||||||||| ||| |||||||||||| || |||||||| ||||||    
T  18727732 ggtaccaaaaccgtgttaactcggaggtaaactcgaattctggtaaaatcaaaaagtttgacgagtttcaccgagttaacattcgataaactcgtgtaaa 18727633  T
Q  216 ctcgaccaagttt 228  Q
    ||||||| |||||    
T  18727632 ctcgaccgagttt 18727620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 38295806 - 38295698
Alignment:
Q  113 ttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgt 212  Q
    ||||||| |||||| ||||||||||||||| ||| | ||||||||||| ||||  |||||||||||| |||||||||||||||||||  ||||||| |||    
T  38295806 ttaggtatcaaaattgtgttaattcggaggaaaatttggtttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactcggtaaactcgtgt 38295707  T
Q  213 aaactcgac 221  Q
    |||||||||    
T  38295706 aaactcgac 38295698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 28740080 - 28739933
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||  ||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  28740080 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 28739983  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  28739982 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 28739933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 28845001 - 28845148
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||  ||||||||||| ||||||||||||| || |||||||| |||||||||| || |||    
T  28845001 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaat 28845098  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  28845099 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 28845148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 35404421 - 35404312
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacact 198  Q
    |||||| ||| |||||||||||| |||||||||||| |  |||||||||||||||| ||||| ||| | || ||||||||| ||||||||||||||||||    
T  35404421 tcgagtttacgtttttaggtaccgaaatcgtgttaacttagaggtaaactcggtttttggtaaaattggaaagtttgacgagtttgaccgagttaacact 35404322  T
Q  199 caataaactc 208  Q
    | ||||||||    
T  35404321 cgataaactc 35404312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 2308844 - 2308695
Alignment:
Q  69 taaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaa 168  Q
    ||||| |||||||||||| ||||  ||||||  | | ||| |||||| |||||||||||||||||| ||||||||||| ||||||| ||||| |||| ||    
T  2308844 taaatcgagtgttaactcgccga--gtttattaaatttacgtttttatgtaccaaaatcgtgttaactcggaggtaaattcggtttgtggtaaaatcaaa 2308747  T
Q  169 aggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    | ||||||| | ||||||| |||||||||||  |||| || |||||||||||    
T  2308746 aagtttgacaagtttgaccaagttaacactcggtaaaatcgtgtaaactcga 2308695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 15224242 - 15224330
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactca 200  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||  |||||||| ||||||||| ||||||||| ||||||||||    
T  15224242 tttaggtaccaaaatcgtgttaactcagaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgaccgaattaacactca 15224330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 18900036 - 18899921
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||| ||| ||||| || ||||||||| ||||||||||||    
T  18900036 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagtt 18899937  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  18899936 aacactcagtaaactc 18899921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 3991772 - 3991870
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  3991772 tcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 3991870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 10657846 - 10657993
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| |||||||||||||| || |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| ||| ||| ||||| |||    
T  10657846 tccgtaaatcgagtgttaactctctgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaat 10657943  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| ||| || |||||||||||| |||||||| |||||    
T  10657944 tggaaggtttaacgagtttaactgagttaacactcgataaactcgtgtaa 10657993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 11153441 - 11153354
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||||| |  |||||||||||| ||||||||||||||||||||||||| |||||| | ||||| ||| |||||||||||||||||    
T  11153441 tttttaggtgctgaaatcgtgttaactcggaggtaaactcggtttctggtaaaatcgagatgtttggcgagtttgaccgagttaacac 11153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 13833205 - 13833053
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||| |||||||||| ||| |  ||||||||| ||| ||||||||||| ||||||||||||| || |||||||||||  ||||| ||| |||    
T  13833205 tccgcaaattgaatgttaactcttcgaga--ttatcgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcaatttctagtaaaat 13833108  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcg 219  Q
    |  ||| ||| || | |||||| ||||||||||||  ||||||| ||||||||||    
T  13833107 cagaagatttaacaagtttgactgagttaacactcggtaaactcgtgtaaactcg 13833053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 19948538 - 19948635
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||||||||  ||||| |||||||| |||||||||||||| |||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  19948538 cgagtttacatttttaggtggcaaaaacgtgttaactcggaggtaaactcagtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 19948635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 31847348 - 31847203
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtct-acatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaa 168  Q
    |||| |||||||||||||||||  ||||||||||| | || ||||||||||  |||||| || ||| ||||||||||||||  |||||| || ||||  |    
T  31847348 aaatcgagtgttaactctccga--gtttatcgagttttacgtttttaggtattaaaatcatggtaactcggaggtaaactctatttctgataaaatcaga 31847251  T
Q  169 aggtttgacgaatttgaccgagttaacactcaataaactcatgtaaac 216  Q
    ||||||||||| || |||||| |||||||||  ||||||| |||||||    
T  31847250 aggtttgacgagttcgaccgaattaacactcggtaaactcgtgtaaac 31847203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 3575291 - 3575398
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactca 200  Q
    |||| ||| ||||||||||| |||||| |||||| || |||||||| ||||||||||||| ||| | ||||||| |||| |||||| ||||||||||||     
T  3575291 gagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcg 3575390  T
Q  201 ataaactc 208  Q
     |||||||    
T  3575391 gtaaactc 3575398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 43078967 - 43079061
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    ||||||| || ||||||||||||||||||| || ||||  ||||||| |||| |||||  |||||||||||| |||||||| |||||||||||||    
T  43078967 gtgttaactctgaggtaaactcggtttctgttaaaatccgaaggtttaacgagtttgattgagttaacactcgataaactcgtgtaaactcgacc 43079061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 379389 - 379494
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| || || ||||| |||| || |||| |||||| ||||||||||||  ||||||||    
T  379389 tttttaggtacaaaaatcgtgttaactctgaggtaaattcggtttttgataaaatcggaaggcttaacgagtttgactgagttaacactcggtaaactca 379488  T
Q  210 tgtaaa 215  Q
    | ||||    
T  379489 tttaaa 379494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 15926377 - 15926474
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||||| ||| ||||| |||||||||||||||| || |||||||| |||||| ||||||||| ||||| || ||||||||| |||||| |||||||||    
T  15926377 tcgagtttacgttttttggtaccaaaatcgtgtcaactcggaggttaactcgatttctggtaaaatcgcaatgtttgacgagtttgactcgagttaac 15926474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 38413555 - 38413458
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| ||||| || ||||||||||||||||||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  38413555 cgagtttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 38413458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 41978847 - 41978934
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||||  ||||| | |||||||||||||||||||||||||| || |  ||||| || ||||||||| |||||||||||||||||    
T  41978847 tttttaggtggcaaaaacatgttaattcggaggtaaactcggtttttgatgaaatcggaaagtttgacgagtttgaccgagttaacac 41978934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 215043 - 214945
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||||||||||||||| ||||| |  ||| ||| | ||| ||||||||||||||||||||||||| ||  |||||||||| |||||||||| |||    
T  215043 tccgcaaattgagtgttaactttccgaga--ttaccgaatttacgtttttaggtaccaaaatcgtgttaactctaaggtaaactcagtttctggtaaaat 214946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 13898497 - 13898573
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  13898497 caaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 13898573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 14039114 - 14039190
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  14039114 caaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 14039190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 24025858 - 24025980
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    |||||||||  ||||| |||||||| | |||| |||||||||||| ||||| ||||  || |||||||||||| ||| ||||||||||    |||||||     
T  24025858 tttttaggtgtcaaaaacgtgttaacttggagataaactcggtttttggtaaaatcagaatgtttgacgaattggactgagttaacacgtgttaaactcg 24025957  T
Q  210 tgtaaactcgaccaagtttacat 232  Q
    ||| ||||||||  |||||||||    
T  24025958 tgtgaactcgactgagtttacat 24025980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 33262852 - 33262950
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||| ||| |||||||||  ||||| ||||| || ||| ||||||||||||||| ||||  ||||| || ||||||||| |||||| ||||||||||    
T  33262852 tcgagtttacgtttttaggtggcaaaaacgtgtaaactcgaaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgactgagttaacac 33262950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 43825317 - 43825403
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||||| || |||||||| ||||||||||||| ||| | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  43825317 gtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 43825403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 34342205 - 34342334
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| ||  ||||| ||||| ||| |||||||||||||||  | |||||   |  ||||||||||||||||||||| | |    
T  34342205 tccgcaaatcgagtgttaactctctga--gtttaccgagtttacgtttttaggtaccaaatccatgttagcactaaggtaaactcggtttctggtaaact 34342302  T
Q  165 cgaaaggtttgacgaatttgaccgagttaaca 196  Q
    || |||||||||||| || ||  |||||||||    
T  34342303 cggaaggtttgacgagttagattgagttaaca 34342334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 1833808 - 1833747
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggta 160  Q
    |||||| ||| |||||||||| ||||||||||| |||| ||||||||| ||| |||||||||    
T  1833808 tcgagtttacgtttttaggtaacaaaatcgtgtcaatttggaggtaaattcgatttctggta 1833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 32293923 - 32294008
Alignment:
Q  111 ttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||| ||||||||||||||||||| || || ||||||| | ||||| ||| ||||| || ||||||||| |||||| |||||||||    
T  32293923 tttttggtaccaaaatcgtgttaaatctgatgtaaactggatttcttgtaaaatcggaatgtttgacgagtttgactcgagttaac 32294008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 45161198 - 45161137
Alignment:
Q  136 tcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||||||||||||||| ||||  ||||| || ||||||||| || ||||||||||||||    
T  45161198 tcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagttcgaccgagttaacac 45161137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 32242306 - 32242211
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||| |||||||| || ||||||||||||||||| || |||||||||| | ||||| ||| ||||  || |||| |||| |||||| |||||||||    
T  32242306 gagtttacattttgagataccaaaatcgtgttaactctgaggtaaacttgatttcttgtaaaatcagaatgtttaacgagtttgactcgagttaac 32242211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 12877686 - 12877740
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggttt 154  Q
    ||||| ||| |||||||||  ||||| |||||||| |||||||||||||||||||    
T  12877686 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggttt 12877740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 8029974 - 8029806
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||||||| |||  ||||||||||| ||| | ||||||||||||||||||||||| || ||| |||||||| ||||||||| |||    
T  8029974 tccgtaaatcgagtgttaactcttcga--gtttatcgagtttacgtgtttaggtaccaaaatcgtgttaactctgagataaactcgatttctggtaaaat 8029877  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttacatcta 235  Q
    || |||||||||||| |||||||||||||||||||  |||| || ||||||||||||| ||||||||||||    
T  8029876 cggaaggtttgacgagtttgaccgagttaacactcggtaaaatcgtgtaaactcgaccgagtttacatcta 8029806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 31625724 - 31625877
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||||| |||    
T  31625724 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaat 31625821  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    || ||||||| |||| |||||| ||||||||||||  ||||||| |||||||||||    
T  31625822 cggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 31625877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 32497962 - 32498112
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||||||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||||| ||    
T  32497962 aaattgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggaa 32498059  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    ||||| ||| ||||||  |||||||||||   ||||||| |||||||||||||    
T  32498060 ggtttaacggatttgattgagttaacactaggtaaactcgtgtaaactcgacc 32498112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 10295124 - 10294983
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| | ||||||||||| || |||||||||||||||||||||| |||    
T  10295124 tccgtaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaacaatcgtgttaactctgaggtaaactcggtttctggtaaaat 10295027  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    || ||||||| |||| |||||| ||||||||||||  |||||||    
T  10295026 cggaaggtttaacgagtttgactgagttaacactcggtaaactc 10294983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 27878723 - 27878607
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||  ||||||||||| |||||  |||||||||||| || ||||| ||    
T  27878723 tttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcggtaggtttgacgagtttgatagagttaacactcgatgaactcgtg 27878624  T
Q  212 taaactcgaccaagttt 228  Q
    ||||||||||| |||||    
T  27878623 taaactcgaccgagttt 27878607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 28018904 - 28018788
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||  ||||||||||| |||||  |||||||||||| || ||||| ||    
T  28018904 tttaggtaccaaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcggtaggtttgacgagtttgatagagttaacactcgatgaactcgtg 28018805  T
Q  212 taaactcgaccaagttt 228  Q
    ||||||||||| |||||    
T  28018804 taaactcgaccgagttt 28018788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 9288279 - 9288132
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||| ||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  9288279 tccgcaaatcgagtgttaactcttcgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 9288182  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||| || ||||||||||    
T  9288181 tggaaggtttaacgagtttgactgagttaacactcagtatactcatgtaa 9288132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 14781917 - 14781770
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  |||||||||  |||||||||||||  ||||||||||||| || |||||||| ||||||||||||| |||    
T  14781917 tccgcaaatcgagtgttaaatctccgaga--ttatcgagttgacatttttaggtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 14781820  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||| ||||||| |||||    
T  14781819 tggaaggtttaacgagtttgactgagttaacactcagtaaactcgtgtaa 14781770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 26856526 - 26856676
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||  ||| ||||||| ||||||||||||| || |||||||||||||||||||||| ||||  ||    
T  26856526 aaatcgagtgttaactctccgaga--ttaccgagtttatgtttataggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcagaa 26856623  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    ||||| |||| |||||| ||||||||||||  ||||||| |||||| ||||||    
T  26856624 ggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaattcgacc 26856676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 6388259 - 6388094
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||||||||| |||||| ||||  ||||||||| | ||  ||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||    
T  6388259 tccgcaaattgagtggtaactcgccga--gtttatcgaatttatgtttttaggtaccaaaatcgtgttaactcggaggtaaactctgtttatggtaaaat 6388162  T
Q  165 cgaaaggtttgacgaatttgaccgagtta----acactcaataaactcatgtaaactcgaccaagttt 228  Q
    || || ||||||| | ||||||| |||||    |||||| |||||||| |||||||| |||| |||||    
T  6388161 cggaaagtttgacaagtttgaccaagttaacgtacactcgataaactcgtgtaaacttgaccgagttt 6388094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 12522641 - 12522529
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||||||  |||||   ||| | ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||    
T  12522641 tccgcaaatcgagtgttaactctccga--gtttactaagtttgcatttttaggtaccaaaatcgtgttaactcagaggtaaactcggtttctggtaaaat 12522544  T
Q  165 cgaaaggtttgacga 179  Q
    || ||||||||||||    
T  12522543 cggaaggtttgacga 12522529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 19717659 - 19717527
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  19717659 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 19717562  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| ||||  ||||| ||||||||||||    
T  19717561 tggaaggtttaacgagattgactgagttaacactc 19717527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 41393966 - 41394064
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||| ||  |||||||||  |||||||    
T  41393966 tttttaggtatcaaaatcgtgttaattcggaggtaaactcagtttctgataaaatcgaaaggtttgacaaatttgatcgtattaacactcggtaaactc 41394064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 44725547 - 44725429
Alignment:
Q  96 ttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaac 195  Q
    ||||||||  ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||||||| |||| |||||| ||||||||    
T  44725547 ttatcgagattacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaac 44725448  T
Q  196 actcaataaactcatgtaa 214  Q
    ||||  ||||||| |||||    
T  44725447 actcggtaaactcgtgtaa 44725429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 19484227 - 19484323
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| |||||||||||||||||||| |||||||    
T  19484227 tttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactc 19484323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 18958512 - 18958365
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| | ||||||||||| |||    
T  18958512 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaattggtttctggtaaaat 18958415  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| || |  ||||| ||||||||||||  ||||||| |||||    
T  18958414 tggaaggtttaacaagattgactgagttaacactcggtaaactcgtgtaa 18958365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 43166428 - 43166314
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| ||||||||||| ||||||||||||| || |||||||| |  |||||||||| ||| |||||||||||||| |||||| ||||||||||||    
T  43166428 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaataagtttctggtaaaattgaaaggtttgacgagtttgactgagttaacactc 43166329  T
Q  200 aataaactcatgtaa 214  Q
      ||||||| |||||    
T  43166328 ggtaaactcgtgtaa 43166314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 18305756 - 18305614
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||  ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||    
T  18305756 aaatcgagtgttaactctccgaga--ttaccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaa 18305659  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| | || |||||| ||||||||||||  ||||||| |||||    
T  18305658 ggtttaaagagtttgactgagttaacactcggtaaactcgtgtaa 18305614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 26620446 - 26620329
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| || |||||||| || | |||||||||||| | || |||||| || ||||||| || |||||||| ||||||||| ||||| |||||||||||||    
T  26620446 cgagtttatatttttagatatcgaaatcgtgttaacttggtggtaaattcagtttctgataaaatcgaaaagtttgacgagtttgatcgagttaacactc 26620347  T
Q  200 aataaactcatgtaaact 217  Q
     |||||||||||||||||    
T  26620346 gataaactcatgtaaact 26620329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 27915667 - 27915551
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    |||| |||||||||||||||||| || ||  |||| ||| |||||| || |||||  ||||||||||| ||||||||||||||||||| || ||||| ||    
T  27915667 tttatgtaccaaaatcgtgttaactcagatttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaacactcgatgaactcgtg 27915568  T
Q  212 taaactcgaccaagttt 228  Q
    ||||||||||| |||||    
T  27915567 taaactcgaccgagttt 27915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 27962086 - 27961970
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    |||| |||||||||||||||||| || ||  |||| ||| |||||| || |||||  ||||||||||| ||||||||||||||||||| || ||||| ||    
T  27962086 tttatgtaccaaaatcgtgttaactcagatttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaacactcgatgaactcgtg 27961987  T
Q  212 taaactcgaccaagttt 228  Q
    ||||||||||| |||||    
T  27961986 taaactcgaccgagttt 27961970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 43308293 - 43308146
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||| ||| |  ||||||||| | | ||||||||||||||||||||||||| || ||  |||| ||||||||||||| |||    
T  43308293 tccgcaaatcgagtgttaactcttcgaga--ttatcgagtttgcgtttttaggtaccaaaatcgtgttaactctgatataaaatcggtttctggtaaaat 43308196  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| || | |||||| ||||||||||||  ||||||| |||||    
T  43308195 tggaaggtttaacaagtttgactgagttaacactcggtaaactcgtgtaa 43308146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 42305384 - 42305242
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||  ||||||||||||| || |||||||| ||||||||||||| ||| | ||    
T  42305384 aaatcgagtgttaactctccgaga--ttaccgagtttacctttttaggtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaa 42305287  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| ||||  ||||| ||||||||| ||  ||||||| |||||    
T  42305286 ggtttaacgagattgactgagttaacattcggtaaactcgtgtaa 42305242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 16364151 - 16364277
Alignment:
Q  96 ttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaac 195  Q
    ||||||| | ||| ||||||||||| ||||||||||||| ||  ||||||| ||||||||| ||| ||||| ||||||| |||| ||||||  | |||||    
T  16364151 ttatcgaatttacgtttttaggtacaaaaatcgtgttaactctaaggtaaattcggtttctagtaaaatcggaaggtttaacgagtttgactaaattaac 16364250  T
Q  196 actcaataaactcatgtaaactcgacc 222  Q
    ||||  ||||||| |||||| ||||||    
T  16364251 actcggtaaactcgtgtaaattcgacc 16364277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 24082223 - 24082289
Alignment:
Q  111 ttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    |||||||||||||||| |||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  24082223 ttttaggtaccaaaattgtgttaatactgaggtaaattcggtttctggtaaaatcgaaaggtttgac 24082289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 37131388 - 37131291
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||||||  |||||||| ||||  || |||||| || |||||| |||||||||    
T  37131388 tcgagtttacatttttaggtaccaaaatcgtgtcaactcggaggtaaactcgacttctggtaaaatcagaatgtttgaagagtttgactcgagttaac 37131291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 12522489 - 12522415
Alignment:
Q  145 aactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcg 219  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||   ||||||| ||||| ||||    
T  12522489 aactcggtttctggtaaaattgaaaggtttgacgagtttgaccgagttaacacttggtaaactcgtgtaagctcg 12522415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 17234724 - 17234810
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||||||||||||||||| | | || ||||||||||||||| ||||||||| ||||| || ||||||||| |||||| |||||||||    
T  17234724 tttttaggtaccaaaatcctatcaactcggaggtaaactcgatttctggtaaaatcggaatgtttgacgagtttgactcgagttaac 17234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 7466780 - 7466884
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    |||||| |||| ||||||||||||| || |||||||| || ||||||| || ||| | |||| || |||| |||||| |||||||||||| ||||||||     
T  7466780 tttttaagtacaaaaatcgtgttaactctgaggtaaaatcagtttctgataaaattggaaggcttaacgagtttgactgagttaacactcgataaactcg 7466879  T
Q  210 tgtaa 214  Q
    |||||    
T  7466880 tgtaa 7466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 33177938 - 33177851
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||||||||||||  ||||||||| | ||||||||||| ||| ||||  ||| |||| ||||||||| |||||| ||||||||||    
T  33177938 tttttaggtaccaaaaatgtgttaatttgaaggtaaactcgatttttggtgaaattgaaatgtttgacgagtttgactgagttaacac 33177851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 39467303 - 39467156
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| || || ||| ||||||||||| |||||||| |||| ||  ||||||| | | ||||||||| |||    
T  39467303 tccgcaaatcgagtgttaactctccgaga--ttaccgcgtttacgtttttaggtacaaaaatcgtattaactctaaggtaaaattgatttctggtaaaat 39467206  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | |||||||  ||| |||||| ||||||||||||  ||||||| |||||    
T  39467205 tggaaggtttagcgagtttgactgagttaacactcggtaaactcgtgtaa 39467156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 28317136 - 28317075
Alignment:
Q  136 tcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||||||||||| ||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  28317136 tcggaggtaaactcgatttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 28317075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 24067106 - 24067202
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    ||||| ||| |||||||||||||||||||||| || |||||||| |||||  ||||||||| |||||  | ||||||||| || ||| |||||||||    
T  24067106 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtgaactcaatttctggtaaaatcggcatgtttgacgagttcgactcgagttaac 24067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 42423258 - 42423318
Alignment:
Q  168 aaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagttt 228  Q
    |||||||||||| ||||||||||||||||||   ||||||| ||||||||| ||| |||||    
T  42423258 aaggtttgacgagtttgaccgagttaacactgggtaaactcctgtaaactctaccgagttt 42423318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 4962865 - 4962703
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||||||| ||||||||||   ||||||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||| ||||  ||| |||    
T  4962865 tccgcaaattgagcgttaactctct--aagtttatcgagtttacgtttttaggtatcaaaatcgtgttaacttggaggtaaactcgatttcaagtaaaat 4962768  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagttta 229  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  4962767 cgaaaggtttgacgagtttgaccgagttaacactcggtaaactcatgtaaactcgaccgagttta 4962703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 16155174 - 16155292
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    ||||||||||||||||||||||||| || |||||||||||||||| || || ||| | |||||||||||| |||||||||||||||||||| |||||||     
T  16155174 tttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttttgataaaattggaaggtttgacgagtttgaccgagttaacactcagtaaactcg 16155273  T
Q  210 tgtaaactcgaccaagttt 228  Q
    ||||||||||||| |||||    
T  16155274 tgtaaactcgaccgagttt 16155292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 20833311 - 20833466
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  ||||||||| ||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||| |||    
T  20833311 tccgcaaatcgagtgttaactctctgaga--ttatcgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaat 20833408  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  20833409 cggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 20833466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 21386613 - 21386477
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||||||| |||||||||||||| |  |||||||||||| ||||||||| ||||||||    
T  21386613 aaatcgagtgttaactctccga--gtttaccgagtttacatttttaggtatcaaaatcgtgttaacttagaggtaaactcgatttctggtaaaatcgaaa 21386516  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
     ||||||||| |||||||||||| ||||||  |||||||    
T  21386515 agtttgacgagtttgaccgagttgacactcggtaaactc 21386477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 48379564 - 48379719
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||    
T  48379564 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcgatttctggtaaaat 48379661  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || |||| || |||| |||||| ||||||||||||  ||||||| |||||||| ||||    
T  48379662 cggaaggcttaacgagtttgactgagttaacactcggtaaactcgtgtaaacttgacc 48379719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 26107743 - 26107900
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||| ||||||||||| |  ||| ||||| ||| ||||||||||| |||||| |||||| || |||||||||||| ||||||||| |||    
T  26107743 tccgcaaatcgagtgataactctccgaga--ttaacgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcgatttctggtacaat 26107840  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaa 224  Q
    || ||||||| |||| |||||| ||||||||||||  ||||||| |||||||||||||||    
T  26107841 cggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgaccaa 26107900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 50903085 - 50902940
Alignment:
Q  75 gagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggttt 174  Q
    ||||||||||||||||| | |  ||||||| ||| |||||| |||| ||||||||||||| || |||||||||||||||||||||| ||| | |||||||    
T  50903085 gagtgttaactctccgagaat--atcgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaattggaaggttt 50902988  T
Q  175 gacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
     |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  50902987 aacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 50902940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 51737473 - 51737321
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||| ||| |||    
T  51737473 tccgcaaatcgagtgttaactctctgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaat 51737376  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||||||||  |||||   |||||||||||||    
T  51737375 cggaaggtttaacgagtttgactgagttaacactcggtaaac---tgtaaactcgacc 51737321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 33693236 - 33693384
Alignment:
Q  78 tgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    ||||||||||||||  ||||| ||||| ||   |||||  ||||||||||||||||| | ||||||||||||| ||||||||| ||||  ||||||||||    
T  33693236 tgttaactctccga--gtttaccgagtttatgattttacataccaaaatcgtgttaacttggaggtaaactcgatttctggtaaaatcagaaggtttgac 33693333  T
Q  178 gaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagttt 228  Q
    || |||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  33693334 gagtttgaccgagttaacactcggtaaactcgtgtaaactcgaccgagttt 33693384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 7437705 - 7437550
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||||||  |||||  |||| ||| | |||||||||||||||||||||||  ||||| |||||||||||| ||||| |||    
T  7437705 tccgcaaatcgagtgttaactctccga--gtttactgagtttacttgtttaggtaccaaaatcgtgttaacacggagataaactcggtttttggtaaaat 7437608  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||| ||  || |||||||||||||||||||  ||||||| |||||||||||||    
T  7437607 cggaaggtatggtgagtttgaccgagttaacactcggtaaactcgtgtaaactcgacc 7437550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 44905641 - 44905486
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| || |||||||| |||||||||||||||| ||||||| |||||||||||||| |||    
T  44905641 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgttcttaggtacaaaaatcgtgttaattctgaggtaatctcggtttctggtaaaat 44905544  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |  |||| || ||||||||||| ||||||||||||  ||||||| | |||||||||||    
T  44905543 cagaaggcttaacgaatttgactgagttaacactcggtaaactcgtataaactcgacc 44905486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 52810772 - 52810927
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||| ||||||| || ||||||||||||| |||||||| |||    
T  52810772 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcgggttctggtaaaat 52810869  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||||||||  ||||||  |||||||||||||    
T  52810870 cggaaggtttaacgagtttgactgagttaacactcggtaaacttgtgtaaactcgacc 52810927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 54629265 - 54629420
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||||||||||||||| || |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||| |||||| || ||     
T  54629265 tccgcaaattgagtgttaactctctgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctgataaaag 54629362  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |||||||||| |||| |||||   |||||||||||| ||||||| |||||||||||||    
T  54629363 cgaaaggtttaacgagtttgattcagttaacactcagtaaactcgtgtaaactcgacc 54629420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 49296109 - 49296224
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||    
T  49296109 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagtt 49296208  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  49296209 aacactcagtaaactc 49296224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 8598652 - 8598774
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  8598652 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 8598751  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  8598752 aacactcagtaaactcgtgtaaa 8598774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 37455261 - 37455408
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||  ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  37455261 tccgcaaatcgagtgttaactctccgaga--ttaccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 37455358  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||| ||||||| |||||    
T  37455359 tggaaggtttaacgagtttgactgagttaacactcactaaactcgtgtaa 37455408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 36673933 - 36673791
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||| ||||||| |  |||||||||  ||||||||| |||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||    
T  36673933 aaatcgagtgttaaatctccgaga--ttatcgagttgacatttttaagtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaa 36673836  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| |||| |||||| |||||||||||| |||||||| |||||    
T  36673835 ggtttaacgagtttgactgagttaacactcgataaactcgtgtaa 36673791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 49458357 - 49458486
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacact 198  Q
    |||||| ||| | |||||||| |||||| ||||||| || || ||||||||| ||||||||| ||||| |||||||||||| ||||||| | ||||||||    
T  49458357 tcgagtttacgtgtttaggtatcaaaattgtgttaactctgaagtaaactcgatttctggtaaaatcggaaggtttgacgagtttgaccaaattaacact 49458456  T
Q  199 caataaactcatgtaaactcgaccaagttt 228  Q
    || ||||||| ||||||||||||| |||||    
T  49458457 cagtaaactcgtgtaaactcgaccgagttt 49458486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 52617758 - 52617626
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  ||||||| | ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| |||    
T  52617758 tccgcaaatcgagtgttaactctctgaga--ttatcgaatttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 52617661  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    || ||||||| |||| ||||||  |||||||||||    
T  52617660 cggaaggtttaacgagtttgactaagttaacactc 52617626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 23753170 - 23753028
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||| ||||| ||| | ||    
T  23753170 aaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttttggtaaaattggaa 23753073  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| || | |||||| ||||||||||||  ||||||| |||||    
T  23753072 ggtttaaccagtttgactgagttaacactcggtaaactcgtgtaa 23753028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 39038509 - 39038645
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||||| || |  ||||||| | ||| ||||||||||| ||||| ||||||| || |||||||||||||||||||||| ||||| ||    
T  39038509 aaatcgagtgttaactctctgaga--ttatcgaatttacgtttttaggtacaaaaatggtgttaactctgaggtaaactcggtttctggtaaaatcggaa 39038606  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||| |||| ||||||  |||||||||||  |||||||    
T  39038607 ggtttaacgagtttgactaagttaacactcggtaaactc 39038645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 7665563 - 7665726
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||| |||||  |||| | ||| ||| ||||||| ||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||    
T  7665563 aaatcgagtgttaactcgccgaa--tttacctagtttacgtttttagctaccaaaatcgtgttaactcggaggtaaactcgatttttggtaaaatcggaa 7665660  T
Q  170 ggtttgacgaatttgac-cgagttaacactcaataaactcatgtaaactcgaccaagtttacatctaa 236  Q
      |||||||| ||||||  ||||||  ||||  ||||||| ||||||||||||| ||||||| |||||    
T  7665661 tatttgacgagtttgactagagtta--actcggtaaactcgtgtaaactcgaccgagtttacgtctaa 7665726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 17946642 - 17946760
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||| ||||||||||| |||||| |||||| || |||||||||||||||||||||| |||    
T  17946642 tccgcaaatcgagtgttaattctccgaga--ttatcgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcggtttctggtaaaat 17946739  T
Q  165 cgaaaggtttgacgaatttga 185  Q
    || ||||||| |||| |||||    
T  17946740 cggaaggtttaacgagtttga 17946760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 31646042 - 31645900
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||  ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||    
T  31646042 aaatcgagtgttaactctccgaga--ttaccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaa 31645945  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| | || |||||| ||||||||||||  ||||||| |||||    
T  31645944 ggtttaaagagtttgactgagttaacactcggtaaactcgtgtaa 31645900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 22489573 - 22489477
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||| |||||| |||||||| || || ||||||||| ||||||||| ||||| ||||||| |||| |||||||||||||||||||| |||||||    
T  22489573 tttaggtgccaaaaacgtgttaaatcagatgtaaactcgatttctggtaaaatcggaaggtttaacgagtttgaccgagttaacactcagtaaactc 22489477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 43172919 - 43173003
Alignment:
Q  92 aagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttga 176  Q
    ||||||||||||| ||  | ||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||    
T  43172919 aagtttatcgagtttatgtgtttaggtaccaaaatcgtgttgactcggaggtaaactcgatttctggtaaaatcgaaaggtttga 43173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 53835955 - 53836070
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| | ||||||||||| | ||||||||| ||||| || ||||||||| ||||||||||||    
T  53835955 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaacttggaggtaaacttgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 53836054  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  53836055 aacactcagtaaactc 53836070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 18750057 - 18750198
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  |||  |||| ||| ||||||||||| |||||| |||||| || |||||||||||||||||||||| |||    
T  18750057 tccgcaaatcgagtgttaactctctgata--ttactgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcggtttctggtaaaat 18750154  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
     | |||| || |||| |||||| ||||||||||||  |||||||    
T  18750155 tggaaggcttaacgagtttgactgagttaacactcggtaaactc 18750198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 40897555 - 40897692
Alignment:
Q  75 gagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggttt 174  Q
    ||||||||||||||||| |  ||| ||| | |||  |||||||||| ||||||||||||| || |||||||| |||||||||| || ||| | |||||||    
T  40897555 gagtgttaactctccgaga--ttaccgaatttacgattttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaattggaaggttt 40897652  T
Q  175 gacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     |||| |||||| ||||||||||||  ||||||| |||||    
T  40897653 aacgagtttgactgagttaacactcggtaaactcgtgtaa 40897692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 50761881 - 50761730
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| | | ||||||||  ||| | ||    
T  50761881 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatagatttctggtgaaattggaa 50761784  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaa 224  Q
    ||||| |||| |||||| |||||||||||   ||||||| ||| |||||||||||    
T  50761783 ggtttaacgagtttgactgagttaacactaggtaaactcgtgt-aactcgaccaa 50761730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 25049871 - 25049967
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    ||||| ||| |||||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||| || |||||| || |||||| |||||||||    
T  25049871 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgatttctagtaaaatcggaatgtttgatgagtttgactcgagttaac 25049967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 9818665 - 9818568
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  9818665 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 9818568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 42736300 - 42736403
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||||||||| | | ||||||| |||||||||||||||||    ||| ||||||  |||||||||| |||| ||| ||||||||| ||||| ||||||    
T  42736300 agtttatcgagtttgcgtttttagataccaaaatcgtgttaacattgagataaacttagtttctggtaaaatcaaaaagtttgacgagtttgatcgagtt 42736399  T
Q  193 aaca 196  Q
    ||||    
T  42736400 aaca 42736403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 47467484 - 47467415
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||| ||| ||||||||||||||| ||||  ||||||||  |||||||| |||||||||||||||||    
T  47467484 gtgttaactcgaaggtaaactcggtttttggtgaaatcgaaaattttgacgagtttgaccgagttaacac 47467415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 34483823 - 34483737
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||||| || |||||||| ||||||||||||| |||   ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  34483823 gtgttaactctgaggtaaaatcggtttctggtaaaatttgaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 34483737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 37832572 - 37832669
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| ||||| ||||||||| ||||||  |||| ||||  ||||  || ||||||||| |||||||||||||||||    
T  37832572 cgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaacttagtttttggtgaaatcagaaagtttgacgagtttgaccgagttaacac 37832669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 40064278 - 40064375
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| ||||| || | ||||||||| |  |||| ||||  |||||||| ||||||||||||||||| |||||||||    
T  40064278 cgagtttacgtttttaggtggcaaaaacgtgtaaacttggaggtaaatttagtttttggtgaaatcgaaaagtttgacgaatttgaccaagttaacac 40064375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 65 - 230
Target Start/End: Complemental strand, 28404079 - 28403916
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||| ||||  ||||  |||| ||||||||||||||||||||||||||||| | | ||||||| |||||||||  || |||    
T  28404079 tccgcaaatcgagtgttaactcttcgaa--tttactgagtttacatttttaggtaccaaaatcgtgttaacttgaaggtaaattcggtttctaataaaat 28403982  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  28403981 cgaaatgtttgacgaatttgaccgagttaacactcggtaaactcatgtaaactcgaccgagtttac 28403916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 5494881 - 5494726
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||||||||||||||||||||| |  ||| ||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |||    
T  5494881 tccgcaaattgagtgttaactctccgaga--ttaccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 5494784  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |  ||||||||| || |||||| |||||||||||| |||||||| |||||||| ||||    
T  5494783 cagaaggtttgatgagtttgactgagttaacactcgataaactcgtgtaaacttgacc 5494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 47371682 - 47371547
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||||||||| ||| |  |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||    
T  47371682 agtttatcgagtttacgtacttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgccgagtttgaccgagtt 47371583  T
Q  193 aacactcaataaactcatgtaaactcgaccaagttt 228  Q
    |||||||  ||||||| ||||||||||||| |||||    
T  47371582 aacactcggtaaactcgtgtaaactcgaccgagttt 47371547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 45272982 - 45273129
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||| ||||||||||| ||||| ||||||| || |||||||||||||||||||||| |||    
T  45272982 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaat 45273079  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    || |||||||||||| |||||| ||||||||||||  ||||||| |||||    
T  45273080 cggaaggtttgacgagtttgactgagttaacactcggtaaactcgtgtaa 45273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 32760198 - 32760063
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactca 200  Q
    |||| ||| ||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||  ||| || |||| ||||||||||||||||||||    
T  32760198 gagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcgggaggcttaacgagtttgaccgagttaacactca 32760099  T
Q  201 ataaactcatgtaaactcgaccaagtttacatctaa 236  Q
     ||||||| ||||||||||| | ||||||| |||||    
T  32760098 ctaaactcgtgtaaactcgatcgagtttacttctaa 32760063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 42304586 - 42304470
Alignment:
Q  114 taggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgta 213  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||||||||||||||||||   ||||||| ||||    
T  42304586 taggtgccaaaatcatgttaattcggaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgaccgagttaacactaggtaaactcgtgta 42304487  T
Q  214 aactcgaccaagtttac 230  Q
    ||||||||| |||||||    
T  42304486 aactcgaccgagtttac 42304470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 6312991 - 6313138
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  6312991 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 6313088  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  6313089 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 6313138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 25612507 - 25612654
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  25612507 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 25612604  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  25612605 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 25612654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 29396217 - 29396070
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  29396217 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 29396120  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  29396119 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 29396070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 35177300 - 35177202
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| || ||||| |||| ||||||| ||||||||||||||||||| ||||||||    
T  35177300 tttttaggtaccaaaatcgtgttaattcagaggtaaactcgatttctgataaaatcggaaggattgacgagtttgaccgagttaacactcgataaactc 35177202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 46328401 - 46328556
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || ||||||||||||||||||| || |||    
T  46328401 tccgcaaatcgagtgttaattctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctgttaaaat 46328498  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||  ||||||||||||  ||||||| |||||||||||||    
T  46328499 cggaaggtttaacgagtttgattgagttaacactcggtaaactcgtgtaaactcgacc 46328556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 49237099 - 49236974
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| |||||||||  || |||  ||||||||||| ||  | |||||||||||||| ||||||||||||||| ||| |||||||||||||| |||    
T  49237099 tccgtaaatcgagtgttaatacttcga--gtttatcgagtttatgtgtttaggtaccaaaaccgtgttaattcggagttaagctcggtttctggtaaaat 49237002  T
Q  165 cgaaaggtttgacgaatttgaccgagtt 192  Q
    ||||||||||||||| ||||||||||||    
T  49237001 cgaaaggtttgacgagtttgaccgagtt 49236974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 4005081 - 4005203
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  4005081 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 4005180  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  4005181 aacactcagtaaactcgtgtaaa 4005203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 25253485 - 25253644
Alignment:
Q  69 taaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaa 168  Q
    ||||| ||||||||| |||| ||  ||||| ||||| ||  |||||||||||||||||||||||||| | |||||||| ||||||||||||| | ||| |    
T  25253485 taaatcgagtgttaattctctga--gtttaccgagtttatgtttttaggtaccaaaatcgtgttaatactgaggtaaattcggtttctggtaaactcgga 25253582  T
Q  169 aggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
    || |||||||| |||||| ||||||||| ||  ||||||| ||||||||||| | |||||||    
T  25253583 agatttgacgagtttgactgagttaacattcggtaaactcttgtaaactcgatcgagtttac 25253644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 51702010 - 51702157
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||| ||||||| || |||||||| ||||||||||||| |||    
T  51702010 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaattgtgttaactctgaggtaaaatcggtttctggtaaaat 51702107  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
      |||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  51702108 taaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 51702157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 1243394 - 1243294
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| |||||||||||||||||||| ||||||||||    
T  1243394 tttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcatg 1243295  T
Q  212 t 212  Q
    |    
T  1243294 t 1243294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 3583689 - 3583528
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||||||  ||||| ||||| ||| |||||||||||| |||||||||||| |  || ||||||||||||||| ||| |||    
T  3583689 tccgcaaatcgagtgttaactctccga--gtttaccgagtttacgtttttaggtaccgaaatcgtgttaacttagaagtaaactcggtttctagtaaaat 3583592  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagttt 228  Q
    || || ||||||||| ||| |||||||||||||||  ||||||  || |||||| ||| |||||    
T  3583591 cggaaagtttgacgagtttaaccgagttaacactcggtaaacttgtgcaaactcaaccgagttt 3583528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 49231465 - 49231577
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||| ||||||  |||||||| ||  ||||||      
T  49231465 tttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtataatcggaaggtttaacgagtttgactaagttaacaatcggtaaacttg 49231564  T
Q  210 tgtaaactcgacc 222  Q
    |||||||||||||    
T  49231565 tgtaaactcgacc 49231577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 9192038 - 9192160
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||  || ||||||||| ||||||||||||    
T  9192038 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcagaaagtttgacgagtttgaccgagtt 9192137  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  9192138 aacactcagtaaactcgtgtaaa 9192160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 15834817 - 15834670
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||| ||| ||||| |||    
T  15834817 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaat 15834720  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  15834719 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 15834670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 51106906 - 51107028
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||| ||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  51106906 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggaaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 51107005  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  51107006 aacactcagtaaactcgtgtaaa 51107028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 9322291 - 9322181
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  9322291 tccgtaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 9322194  T
Q  165 cgaaaggtttgac 177  Q
     | ||||||||||    
T  9322193 tggaaggtttgac 9322181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 41353454 - 41353550
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| |||||||||||||||||||| |||||||    
T  41353454 tttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactc 41353550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 5209456 - 5209361
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaact 207  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||  ||||  || ||||||||| ||||| |||||||||||||||||||||    
T  5209456 tttaggtaccaaaatcgtgttaactcggaggtcaactcgatttctggtgaaatcagaaagtttgacgagtttgatcgagttaacactcaataaact 5209361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 8147331 - 8147446
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||| | || ||||||||| ||||||||||||    
T  8147331 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagtt 8147430  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  8147431 aacactcagtaaactc 8147446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 52182319 - 52182443
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||| ||||  ||||||||||| ||| |||||||||||  ||||||||| |||||||||||||| ||| ||||||||| ||||||||    
T  52182319 aaatcgagtgttaactcgccga--gtttatcgagtttacgtttttaggtactgaaatcgtgtcaattcggaggtaaattcgatttctggtaaaatcgaaa 52182416  T
Q  170 ggtttgacgaatttgac-cgagttaac 195  Q
     ||||||||| || ||| |||||||||    
T  52182417 tgtttgacgagttcgactcgagttaac 52182443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 18798900 - 18799014
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||||||| ||||  ||||| ||||||||||||    
T  18798900 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagattgactgagttaacactc 18798999  T
Q  200 aataaactcatgtaa 214  Q
      ||||||| |||||    
T  18799000 ggtaaactcgtgtaa 18799014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 38535929 - 38535774
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||| ||||||||||  ||| ||| ||||| ||| ||||||| ||| ||||| ||||||| || |||||||||| ||||||||||| |||    
T  38535929 tccgcaaatcgagttttaactctcc--aagattaccgagtttacgtttttagttacaaaaattgtgttaactctgaggtaaactgggtttctggtaaaat 38535832  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || |||  || |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  38535831 cggaagacttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 38535774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 38558147 - 38557992
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||| ||||||||||  ||| ||| ||||| ||| ||||||| ||| ||||| ||||||| || |||||||||| ||||||||||| |||    
T  38558147 tccgcaaatcgagttttaactctcc--aagattaccgagtttacgtttttagttacaaaaattgtgttaactctgaggtaaactgggtttctggtaaaat 38558050  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || |||  || |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  38558049 cggaagacttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 38557992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 48966579 - 48966462
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| || |||||||||| | |||||| |  ||| | |||||||||||| |||||||||||||| ||||  ||||||| ||    
T  48966579 tttaggtaccaaaatcgtgttaactctgaggtaaacttgatttctgatgaaattggaaggtttgacgagtttgaccgagttaatactcggtaaactcgtg 48966480  T
Q  212 taaactcgaccaagttta 229  Q
    ||||||| ||| ||||||    
T  48966479 taaactctaccgagttta 48966462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 49971703 - 49971599
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggt-ttgacgaatttgac-cgag 190  Q
    |||||| ||||| ||| |||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||| || ||||||| |||||| ||||    
T  49971703 agtttaccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgttttctggtaaaatcgaaatgtgttgacgagtttgactcgag 49971604  T
Q  191 ttaac 195  Q
    |||||    
T  49971603 ttaac 49971599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 8141016 - 8140884
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||| ||||||||||| ||||||||||||| || |||||||| ||| ||||||||| |||    
T  8141016 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaat 8140919  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
       ||||||| | || |||||| ||||||||||||    
T  8140918 tagaaggtttaatgagtttgactgagttaacactc 8140884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 15927313 - 15927448
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||||||||| ||  | |||| |||||||||| ||||||| || |||||||| |||||||||| || ||||| || ||||||||| |||||| |||||    
T  15927313 agtttatcgagtttaagtgtttaagtaccaaaattgtgttaactctgaggtaaattcggtttctgataaaatcggaaagtttgacgagtttgactgagtt 15927412  T
Q  193 aacactcaataaactcatgtaaactcgaccaagttt 228  Q
    |||| || |||||||  ||||||||| ||| |||||    
T  15927413 aacattcgataaactattgtaaactcaaccgagttt 15927448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 26757629 - 26757744
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| || ||||| || |||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  26757629 agtttaccgagtttacgtgtttaggtgctaaaaacgagttaactcagaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 26757728  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  26757729 aacactcagtaaactc 26757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 49453149 - 49453043
Alignment:
Q  112 tttaggtaccaaaa-tcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcat 210  Q
    |||||||||||||| ||||||||| || |||||||||||| ||||||| | ||||  |||||||||| | |||||||||||||||||||  ||||||| |    
T  49453149 tttaggtaccaaaaatcgtgttaactctgaggtaaactcgatttctggaaaaatcataaggtttgacaagtttgaccgagttaacactcggtaaactcgt 49453050  T
Q  211 gtaaact 217  Q
    |||||||    
T  49453049 gtaaact 49453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 25831027 - 25830885
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || ||| |||| |||||| ||  || ||| | ||    
T  25831027 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgagataaaatcggttcctaataaaattggaa 25830930  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| |||| |||||| ||||||||||||| ||||||| |||||    
T  25830929 ggtttaacgagtttgactgagttaacactcagtaaactcgtgtaa 25830885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 11579188 - 11579092
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||| | |||| |||||||| ||||||||||| | | ||||||||| ||||| || ||||||||| |||||||||||||||||||| |||||||    
T  11579188 tttaggtgctaaaaacgtgttaactcggaggtaaatttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactc 11579092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 48177192 - 48177078
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggttt-ctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    |||| ||| ||||||||||  ||||||||||||| || |||||||| ||||||| |||||| ||| | ||||||| |||| |||||| ||||||||||||    
T  48177192 gagtttacgtttttaggtagaaaaatcgtgttaactctgaggtaaaatcggttttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 48177093  T
Q  200 aataaactcatgtaa 214  Q
    | ||||||| |||||    
T  48177092 agtaaactcgtgtaa 48177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 7798521 - 7798618
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  7798521 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 7798618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 33886950 - 33886863
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  33886950 tttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 33886863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 33957300 - 33957387
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  33957300 tttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 33957387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 3593267 - 3593358
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagt 191  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||| ||| |||||  || ||||| |||||||||| | ||| |||||||    
T  3593267 cgagtttatatttttaggtatcaaaatcgtgttaactcggaggtaaattcgatttctaataaaatcggaaggtttgacaagtttaaccgagt 3593358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 34751651 - 34751575
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||| ||||||||||||||||||| ||||  ||||| || ||||| | | |||||||||||||||||    
T  34751651 caaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgccaagtttgaccgagttaacac 34751575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 1108374 - 1108468
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaac 195  Q
    |||| ||| |||||||||   |||| ||||| || ||||||||||||||||||| ||||  ||||| || ||||||||| |||||| ||||||||    
T  1108374 gagtttacgtttttaggtggtaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgactgagttaac 1108468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 27257948 - 27257872
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac 186  Q
    |||||||||||||||||||||| || || |||||||||| | |||  |||| ||||| || ||||||||| ||||||    
T  27257948 tttttaggtaccaaaatcgtgtcaactccgaggtaaacttgattttcggtaaaatcggaatgtttgacgagtttgac 27257872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 51901983 - 51902097
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    ||||||| |||| |||||||||||| | |  | ||||||   |||||| || |||| ||| |||| || | |||||| |||||||||||| ||||| |||    
T  51901983 tttttagataccgaaatcgtgttaacttgatgctaaacttcatttctgataaaatccaaaagtttaacaagtttgactgagttaacactcgataaattca 51902082  T
Q  210 tgtaaactcgaccaa 224  Q
    | |||||||||||||    
T  51902083 tctaaactcgaccaa 51902097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 18954486 - 18954563
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||| ||||||||||||| ||||  ||||| || |||||||    
T  18954486 cgagtttacgtttttaggtggcaaaaacgtgttaactcggacgtaaactcggtttttggtgaaatcggaaagtttgac 18954563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 34019168 - 34019237
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||| ||||||||||| ||| ||| ||||  ||||| || |||||||||  ||||||||||||||||    
T  34019168 gtgttaactcggaggtaaattcgatttttggtgaaatcggaaagtttgacgaggttgaccgagttaacac 34019237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 29219611 - 29219683
Alignment:
Q  142 gtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| ||||||||||||  ||| | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  29219611 gtaaaatcggtttctggtgaaattggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 29219683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 8675750 - 8675901
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataa-tcgaa 168  Q
    |||| ||||||||||||||||| |  ||| |||||  || ||||||||||||||||||||||||| ||  ||||||||||||||||||||| || |||||    
T  8675750 aaatcgagtgttaactctccgaga--ttaccgagttaacgtttttaggtaccaaaatcgtgttaactctaaggtaaactcggtttctggtaaaaatcgaa 8675847  T
Q  169 aggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    ||||||||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  8675848 aggtttgacgagtttgactgagttaacactcgataaactcgtgtaaactcgacc 8675901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 29893386 - 29893541
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| |||||||||| |||| ||||||||||||| || ||||||||||| |||||||||  |||    
T  29893386 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaagtacaaaaatcgtgttaactctgaggtaaactcagtttctggtgaaat 29893483  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |||||||||| |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  29893484 cgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 29893541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 29614586 - 29614439
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  29614586 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 29614489  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     ||||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  29614488 tgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 29614439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 7993571 - 7993728
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| || ||||||| |||| ||||||||||||| |  |||||||||||||||||||||| |||    
T  7993571 tccgcaaatcgagtgttaactctccgaga--ttaccgagtatatatttttaagtacaaaaatcgtgttaactatgaggtaaactcggtttctggtaaaat 7993668  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaa 224  Q
    || ||||||| |||| |||||| ||||||||||||  ||||||  |||||||||||||||    
T  7993669 cggaaggtttaacgagtttgactgagttaacactcggtaaactggtgtaaactcgaccaa 7993728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 510060 - 510207
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  510060 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 510157  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  510158 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 510207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 28342725 - 28342872
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  28342725 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 28342822  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  28342823 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 28342872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 33892025 - 33891878
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| | ||| ||| ||||||||||| ||||||||||||| ||  ||||||| ||||||||||||| |||    
T  33892025 tccgcaaatcgagtgttaactctccgaga--ttaccaagtttacgtttttaggtacaaaaatcgtgttaactctaaggtaaaatcggtttctggtaaaat 33891928  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  33891927 tggaaggtttaacgaatttgactgagttaacactcaataaactcgtgtaa 33891878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 37328321 - 37328476
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||| ||||||||| |  ||||||||| ||| ||||||||||| ||||||||||||| ||  ||||||||||| ||||||||| |||    
T  37328321 tccgcaaatcgagtgttgactctccgaga--ttatcgagtttacgtttttaggtacaaaaatcgtgttaactctaaggtaaactcgatttctggtaaaat 37328418  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||  |||||| ||||||||||||  ||||||| |||||||||||||    
T  37328419 cggaaggtttaacgtgtttgactgagttaacactcggtaaactcgtgtaaactcgacc 37328476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 39784521 - 39784668
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||| ||| ||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  39784521 tccgtaaatcgagtgttaaatcttcgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 39784618  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  39784619 tggaaggtttaacgagtttgacagagttaacactcggtaaactcgtgtaa 39784668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 48136986 - 48136864
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| ||||||||||||||||||||||||| || ||||||||||| |||||||||| |||   |||||||||||| |||||| ||||||||||||    
T  48136986 cgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcagtttctggtaaaattagaaggtttgacgagtttgactgagttaacactc 48136887  T
Q  200 aataaactcatgtaaactcgacc 222  Q
     ||||| || |||||||||||||    
T  48136886 gataaattcgtgtaaactcgacc 48136864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 12740789 - 12740938
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||||||||||||||||| || |||||||||||||| ||||||| ||| | ||    
T  12740789 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtgtctggtaaaattggaa 12740886  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgac 221  Q
    |||||||||| ||||||  ||||| |||||  |||| || ||||||||||||    
T  12740887 ggtttgacgagtttgactaagttagcactcggtaaagtcgtgtaaactcgac 12740938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 42610584 - 42610737
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||||||||||||||| ||  ||||| ||| | ||| | ||||||||||||||||||||||| |  |||||||||| ||||||||||| |||    
T  42610584 tccgcaaattgagtgttaactctctga--gtttaccgaatttacgtgtttaggtaccaaaatcgtgttaaatttgaggtaaacttggtttctggtaaaat 42610681  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    |  |||||||||||| ||||||||||||||||||   ||||||| |||||| ||||    
T  42610682 cagaaggtttgacgagtttgaccgagttaacactgggtaaactcgtgtaaattcga 42610737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 37972635 - 37972513
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| ||||||||||||||||||||||||| || ||| ||||||| |||||||||| ||||| ||||||| ||||||||||| |||||| ||||     
T  37972635 cgagtttacgtttttaggtaccaaaatcgtgttaactctgagataaactcagtttctggtaaaatcggaaggtttaacgaatttgactgagttagcactt 37972536  T
Q  200 aataaactcatgtaaactcgacc 222  Q
      ||||||| |||||||||||||    
T  37972535 ggtaaactcgtgtaaactcgacc 37972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 41827742 - 41827897
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||||||||||||||| || |  |||| |||| ||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||| |||    
T  41827742 tccgcaaattgagtgttaactctctgaga--ttattgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaat 41827839  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |  ||| ||| || | |||||| ||||||||||||  ||||||| |||||||||||||    
T  41827840 cagaagatttaacaagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 41827897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 44256541 - 44256414
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||||||||| ||| ||||||| ||| ||||||||||||| || |||||||||||| ||||||||| ||||| ||    
T  44256541 aaatcgagtgttaactctccgaga--ttatcgagtttacgtttttagatacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaa 44256444  T
Q  170 ggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| |||| |||||| ||||||||||||    
T  44256443 ggtttaacgagtttgactgagttaacactc 44256414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 29585935 - 29586081
Alignment:
Q  72 attgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaagg 171  Q
    ||||||||||||||||| || |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| |||||||| |||| ||||| ||||    
T  29585935 attgagtgttaactctctgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaagtcggtttcgggtaaaatcggaagg 29586032  T
Q  172 tttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    ||| | || |||||| ||||||||||||  ||||||| |||||||||||    
T  29586033 tttaatgagtttgactgagttaacactcggtaaactcgtgtaaactcga 29586081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 18838824 - 18838971
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  18838824 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 18838921  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| ||||||  |||||||| ||  ||||||| |||||    
T  18838922 tggaaggtttaacgagtttgactaagttaacattcggtaaactcgtgtaa 18838971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 23101705 - 23101852
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| ||  ||||||| || |||||||||| |||    
T  23101705 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctaaggtaaaatcagtttctggtaaaat 23101802  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  23101803 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 23101852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 4639981 - 4639862
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||  ||||||||| ||||| ||  |||||||| ||||||||||||    
T  4639981 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactctatttctggtaaaatcggaaattttgacgagtttgaccgagtt 4639882  T
Q  193 aacactcaataaactcatgt 212  Q
    |||||||| |||||||||||    
T  4639881 aacactcagtaaactcatgt 4639862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 14741419 - 14741534
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||| ||| ||||| || ||||||||| ||||||||||||    
T  14741419 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagtt 14741518  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  14741519 aacactcagtaaactc 14741534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 39028501 - 39028648
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||| |||| || || |||||||| ||||||||||||| |||    
T  39028501 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaattgtgtaaactctgaggtaaaatcggtttctggtacaat 39028598  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||| ||| |||| |||||| ||||||||||||| ||||||| |||||    
T  39028599 tggaagatttaacgagtttgactgagttaacactcagtaaactcgtgtaa 39028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 40460505 - 40460358
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||| ||| |  ||| ||||| |||  |||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  40460505 tccgcaaatcgagtgttaactcttcgaga--ttaccgagtttacgcttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 40460408  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||| || |||| |||||    
T  40460407 tggaaggtttaacgagtttgactgagttaacactcagtatactcgtgtaa 40460358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 44121724 - 44121569
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  ||| ||| | ||| ||||||||||| ||||||||||||| |  |||||||| ||||||||||||| |||    
T  44121724 tccgcaaatcgagtgttaactctctgaga--ttaccgaatttacgtttttaggtacaaaaatcgtgttaactatgaggtaaattcggtttctggtaaaat 44121627  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || |||| || |||| |||||| |||||||||||   ||||||| |||||||||||||    
T  44121626 cggaaggcttaacgagtttgactgagttaacacttggtaaactcgtgtaaactcgacc 44121569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 32884185 - 32884295
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||| ||||| || ||||||||||| |||||||||| |||    
T  32884185 tccgtaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgagttaactctgaggtaaactctgtttctggtaaaat 32884282  T
Q  165 cgaaaggtttgac 177  Q
    || ||||||||||    
T  32884283 cggaaggtttgac 32884295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 21486115 - 21486264
Alignment:
Q  71 aattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaag 170  Q
    |||||||||||||||||  ||  ||||||||||| |||| |||||| || |||||||||||||| | | |||||||||||  || ||||| |||   |||    
T  21486115 aattgagtgttaactctttga--gtttatcgagtttacacttttagatatcaaaatcgtgttaacttgaaggtaaactcgaattttggtaaaattagaag 21486212  T
Q  171 gtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |||||| || ||||| |||||||||||||  ||||||| |||||||||||||    
T  21486213 gtttgatgagtttgatcgagttaacactcggtaaactcgtgtaaactcgacc 21486264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 43172121 - 43172221
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| ||  ||||| ||||| |||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||| |||    
T  43172121 tccgcaaatcgagtgttaactctctga--gtttaccgagtttacatttttaggtatcaaaatcatgttaactcggaggtaaactcgatttctggtaaaat 43172218  T
Q  165 cga 167  Q
    |||    
T  43172219 cga 43172221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 3023348 - 3023495
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||  ||||||||||| |||||| |||||| |  |||||||| |||||||||| || |||    
T  3023348 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttatgtttttaggtacaaaaatcatgttaactttgaggtaaaatcggtttctgataaaat 3023445  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  3023446 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 3023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 28034639 - 28034492
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||| || |  ||| ||||| ||| |||||| |||| ||||||||||||| || || ||||| ||||||||||||| |||    
T  28034639 tccgcaaatcgagtgttaactctctgaga--ttaccgagtttacgtttttatgtacaaaaatcgtgttaactctgatgtaaaatcggtttctggtaaaat 28034542  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| |||||||||||   |||||||||||||    
T  28034541 tggaaggtttaacgagtttgactgagttaacacttggtaaactcatgtaa 28034492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 16709428 - 16709533
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| ||||||||||||||||||||| ||| || ||||||||||| |||  ||||| | ||| |||||||||| | ||||||||||||    
T  16709428 agtttaccgagtttacgtttttaggtaccaaaatcgtggtaactctgaggtaaactcagtt--tggtaaactcggaaggtttgacaagtttgaccgagtt 16709525  T
Q  193 aacactca 200  Q
    ||||||||    
T  16709526 aacactca 16709533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 17683664 - 17683769
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| ||||||||||||||||||||| ||| || ||||||||||| |||  ||||| | ||| |||||||||| | ||||||||||||    
T  17683664 agtttaccgagtttacgtttttaggtaccaaaatcgtggtaactctgaggtaaactcagtt--tggtaaactcggaaggtttgacaagtttgaccgagtt 17683761  T
Q  193 aacactca 200  Q
    ||||||||    
T  17683762 aacactca 17683769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 11735279 - 11735194
Alignment:
Q  111 ttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac 195  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| || ||||| ||| |||||| |||||||||    
T  11735279 ttttaggtcccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaatgtttgccgagtttgactcgagttaac 11735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 30823108 - 30823205
Alignment:
Q  123 aaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    |||||||||||| || |||||||||||||||||| ||| ||||| ||||||  |||| |||||  ||||||||||||  ||||||| |||||||||||    
T  30823108 aaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggaaggttcaacgagtttgattgagttaacactcggtaaactcgtgtaaactcga 30823205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 21067869 - 21067949
Alignment:
Q  142 gtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    ||||||||| ||||||||| ||||| ||||||| |||| |||||| ||||||||||||  ||||||| |||||||||||||    
T  21067869 gtaaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgacc 21067949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 21024077 - 21024196
Alignment:
Q  111 ttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcat 210  Q
    ||||||||  ||||| |||||||| ||| ||||||||||||||| ||||  ||||| || ||||||||| |||||||||||||||||    ||||||| |    
T  21024077 ttttaggtgacaaaaacgtgttaactcgaaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacacgtgttaaactcgt 21024176  T
Q  211 gtaaactcgaccaagtttac 230  Q
    ||||||| | || |||||||    
T  21024177 gtaaacttgtccgagtttac 21024196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 27148817 - 27148931
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||| |  |||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| |||  |||| | || ||||  ||    
T  27148817 aaatcgagtgttaactcgc--aaagtttatcgagtttacgtttttaggtatcaaaatcgtgttaaatcggaggtaacctcaatttcagctaaaatcagaa 27148914  T
Q  170 ggtttgacgaatttgac 186  Q
     ||||||||| ||||||    
T  27148915 tgtttgacgagtttgac 27148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 33383088 - 33383178
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctg 157  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||||||||||||| ||| || ||| |||||||||||||||    
T  33383088 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtaccaaaatcgtggtaactctgagataaactcggtttctg 33383178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 34656605 - 34656702
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||   |||| ||||| |||||||| ||||| ||||||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  34656605 cgagtttacgtttttaggtggtaaaaacgtgtaaattcggaagtaaattcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 34656702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 33497195 - 33497107
Alignment:
Q  98 atcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac 186  Q
    ||||||| |||||||||| ||| ||||||||||| || ||||||||||||||| |||||| || ||| | || ||||||||| ||||||    
T  33497195 atcgagtttacatttttaagtatcaaaatcgtgtcaactcggaggtaaactcgatttctgataaaattggaatgtttgacgagtttgac 33497107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 14732385 - 14732298
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||||  ||||| |||||||| ||||||||||||| ||||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  14732385 tttttaggtggcaaaaacgtgttaactcggaggtaaacttggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 14732298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 23017013 - 23017100
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    |||||| ||||||| | ||||||||||||| ||||| ||| ||| | ||| |||||||| |||||||||||||||||||  |||||||    
T  23017013 caaaattgtgttaacttggaggtaaactcgatttctcgtaaaattggaagatttgacgagtttgaccgagttaacactcggtaaactc 23017100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 26201897 - 26201794
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagt 191  Q
    |||||| ||| | |||||||||||||||||||||||||| || ||||||||||||||  ||  || || ||||| || ||||||||| |||||| |||||    
T  26201897 agtttaccgaatttacatttttaggtaccaaaatcgtgtaaactcggaggtaaactcaattattgctaaaatcggaatgtttgacgagtttgactcgagt 26201798  T
Q  192 taac 195  Q
    ||||    
T  26201797 taac 26201794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 35313557 - 35313654
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| ||||||| |  ||||| |||||||| ||||||||||| ||||||| ||||  ||||| || |||||| || |||||||||||||||||    
T  35313557 cgagtttacgtttttagatggcaaaaccgtgttaactcggaggtaaattcggtttttggtgaaatcggaaagtttgatgagtttgaccgagttaacac 35313654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 47067185 - 47067271
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||||| || ||| |||| ||| ||||||||| ||| ||||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  47067185 gtgttaactctgagataaaatcgatttctggtaaaattgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 47067271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 19594248 - 19594307
Alignment:
Q  138 ggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||| |||||||||||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  19594248 ggagataaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 19594307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 6268513 - 6268598
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||  ||||| |||||||| ||||| ||||||| ||||| ||||  |||   || ||||||||| |||||||||||||||||    
T  6268513 tttaggtgtcaaaaacgtgttaactcggatgtaaactaggtttttggtgaaattagaatgtttgacgagtttgaccgagttaacac 6268598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 5800380 - 5800535
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| |||||||||||||  ||    
T  5800380 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcggtttctggtaacat 5800477  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |  ||||||| |||| |||||| |||||||||||| |||||||| |||||||||||||    
T  5800478 cagaaggtttaacgagtttgactgagttaacactcgataaactcgtgtaaactcgacc 5800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 49501313 - 49501165
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||| ||    
T  49501313 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaa 49501216  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    ||||| |||| |||||| ||||||||||||  ||||||| |||||||||||    
T  49501215 ggtttaacgagtttgacggagttaacactcggtaaactcgtgtaaactcga 49501165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 49507378 - 49507230
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||| ||    
T  49507378 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaa 49507281  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    ||||| |||| |||||| ||||||||||||  ||||||| |||||||||||    
T  49507280 ggtttaacgagtttgacggagttaacactcggtaaactcgtgtaaactcga 49507230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 49834619 - 49834464
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||||||||||||||||||   ||| ||| ||||| ||| ||||||| ||| ||||||||||||| || |||||||||||||||||||||| |||    
T  49834619 tccgtaaattgagtgttaactctct--aagattaccgagtttacgtttttagctacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 49834522  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||| ||||  ||||||| |||||||||||||    
T  49834521 cggaaggtttaacgagtttgactgagttaatactcggtaaactcgtgtaaactcgacc 49834464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 28484311 - 28484467
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaa-tcgtgttaattcggaggtaaactcggtttctggtataa 163  Q
    |||| ||||||||||||||||||| || |  ||| ||||| ||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||| ||    
T  28484311 tccgcaaattgagtgttaactctctgaga--ttaccgagtttacgtttttaggtacaaaaagtcgtgttaactctgaggtaaactcggtttctggtaaaa 28484408  T
Q  164 tcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    | | ||||||| |||| |||||| |||||||||||| |||||||| |||||||||||||    
T  28484409 ttggaaggtttaacgagtttgactgagttaacactcgataaactcgtgtaaactcgacc 28484467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 46286709 - 46286839
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| |||||||||||||||||||||||||  |  ||||||||||| ||||| ||| | ||| |||||||||||| |||||||||||||||||||    
T  46286709 cgagtttacgtttttaggtaccaaaatcgtgttaacactaaggtaaactcgatttctagtaaactcggaaggtttgacgagtttgaccgagttaacactc 46286808  T
Q  200 aataaactcatgtaaactcgaccaagtttac 230  Q
     |||||||| ||||||||||| |||||||||    
T  46286809 gataaactcttgtaaactcgatcaagtttac 46286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 5441818 - 5441965
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| || |||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  5441818 tccgtaaatcgaatgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 5441915  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  5441916 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 5441965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 50517205 - 50517315
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| |  |||||||||||| ||||||||| ||| | |||||||||||| |||||||||||||||||||  ||||||| ||    
T  50517205 tttaggtaccaaaatcgtgttaactttgaggtaaactcgatttctggtaaaattggaaggtttgacgagtttgaccgagttaacactcggtaaactcgtg 50517304  T
Q  212 taaactcgacc 222  Q
    |||||||||||    
T  50517305 taaactcgacc 50517315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 32322492 - 32322634
Alignment:
Q  75 gagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggttt 174  Q
    ||||||||||||||||| |  ||| ||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||| ||    
T  32322492 gagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcggtttctggtaaaatcggaaggctt 32322589  T
Q  175 gacgaatttgaccgag-ttaacactcaataaactcatgtaaactc 218  Q
     |||| |||||| ||| |||||||||  ||||||| |||||||||    
T  32322590 aacgagtttgactgagtttaacactcggtaaactcgtgtaaactc 32322634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 29510202 - 29510061
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||||||  ||||||||||| ||| | |||||||| |||||||||||||| || || ||||||||  ||||||||| |||    
T  29510202 tccgcaaatcgagtgttaactctccga--gtttatcgagtttacgtgtttaggtatcaaaatcgtgttaactctgatgtaaactcaatttctggtaaaat 29510105  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    |  |||||||||||| |||||||||||||||||||  |||||||    
T  29510104 cagaaggtttgacgagtttgaccgagttaacactcggtaaactc 29510061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 54341558 - 54341690
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| |||||||||| || || |||||||| ||||||||||||| |||    
T  54341558 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgtaaactctgaggtaaaatcggtttctggtaaaat 54341655  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     ||||||||| |||| |||||| ||||||||||||    
T  54341656 tgaaaggtttaacgagtttgactgagttaacactc 54341690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 23671465 - 23671347
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||  |||||||| ||||||||| ||||| | |||||| ||||| ||||||| ||    
T  23671465 tttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgagcaagttaagactcagtaaactcgtg 23671366  T
Q  212 taaactcgaccaagtttac 230  Q
    |||| | | ||||||||||    
T  23671365 taaaattggccaagtttac 23671347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 27768480 - 27768627
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  27768480 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 27768577  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||| ||  ||||||| |||||    
T  27768578 tggaaggtttaacgagtttgactgagttaacattcggtaaactcgtgtaa 27768627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 48261494 - 48261641
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  |||||||||  |||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  48261494 tccgcaaatcgagtgttaaatctccgaga--ttatcgagttgacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 48261591  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  48261592 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 48261641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 51321272 - 51321419
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || || ||||| ||||||||||||| |||    
T  51321272 tccgcaaatcgagtgttaactctccgata--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgacgtaaaatcggtttctggtaaaat 51321369  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| || | |||||| ||||||||||||  ||||||| |||||    
T  51321370 tggaaggtttaaccagtttgactgagttaacactcggtaaactcgtgtaa 51321419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 29469156 - 29469271
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  29469156 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 29469255  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  29469256 aacactcagtaaactc 29469271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 24966610 - 24966492
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||| ||||| ||| | |||||||| ||| ||||||| ||||||||||   ||||||| ||    
T  24966610 tttaggtaccaaaatcgtgttaactcggaagtaaattcggtttttggtaaaatgggaaggtttgccgagtttgaccaagttaacacttggtaaactcgtg 24966511  T
Q  212 taaactcgaccaagtttac 230  Q
    ||||||||||| |||||||    
T  24966510 taaactcgaccgagtttac 24966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 29855965 - 29856087
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| |||||| |||| ||||||||||||| || |||||||||||| ||||||||| ||| | ||||||| |||| |||||| ||||||||||||    
T  29855965 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 29856064  T
Q  200 aataaactcatgtaaactcgacc 222  Q
      ||||||| |||||||||||||    
T  29856065 ggtaaactcgtgtaaactcgacc 29856087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 37828186 - 37828068
Alignment:
Q  96 ttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaac 195  Q
    ||||||||| ||||||||||| ||| ||||||||||||| || |||||||| ||||||||||||| ||| | ||||||| |||| |||||| ||||||||    
T  37828186 ttatcgagtttacatttttagatacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaac 37828087  T
Q  196 actcaataaactcatgtaa 214  Q
    ||||  ||||||| |||||    
T  37828086 actcggtaaactcgtgtaa 37828068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 26491214 - 26491130
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaaca 196  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||||    
T  26491214 tttaggtaccaaaatcgtgttaaatttgaggtaaactcggtttctggtaaaatcagaaggtttgacgagtttgaccgagttaaca 26491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 8084202 - 8084317
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||| ||| ||||| || ||||||||| ||||||||||||    
T  8084202 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagtt 8084301  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  8084302 aacactcagtaaactc 8084317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 41725534 - 41725670
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||  |  ||| | ||| ||| ||||||||||| ||||||||||||| || |||||||||||| ||||||||| ||||| ||    
T  41725534 aaatcgagtgttaactctccgtga--ttacctagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaa 41725631  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||| |||| |||||| ||||||||||||  |||||||    
T  41725632 ggtttaacgagtttgactgagttaacactcggtaaactc 41725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 51967276 - 51967374
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  51967276 tcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 51967374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 37916217 - 37916360
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||||||||||||||||||||| |  ||||||||| |||||||||| |||| ||||| |||||||            |||||||||||||| |||    
T  37916217 tccgcaaattgagtgttaactctccgaga--ttatcgagtttacatttttatgtacaaaaattgtgttaa------------ctcggtttctggtaaaat 37916302  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  37916303 cggaaggtttaacgagtttgactgagttaacactcagtaaactcgtgtaaactcgacc 37916360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 50018613 - 50018755
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| |||||| |||||| || |||||||| ||||||||||||| ||| | ||    
T  50018613 aaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcatgttaactctgaggtaaaatcggtttctggtaaaattggaa 50018710  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| | ||  ||||| ||||||||||||  ||||||| |||||    
T  50018711 ggtttaaagagattgacagagttaacactcggtaaactcgtgtaa 50018755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 42937502 - 42937406
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||||| | |||| ||| |||| ||||||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||  |||||||    
T  42937502 tttaggtgctaaaagcgttttaactcggaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactccgtaaactc 42937406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 30967128 - 30966981
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || ||| |||| | ||||||||||| |||    
T  30967128 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgagataaaattggtttctggtaaaat 30967031  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| ||||||  |||||||||||  ||||||| |||||    
T  30967030 tggaaggtttaacgagtttgactaagttaacactcggtaaactcgtgtaa 30966981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 33138812 - 33138877
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||    
T  33138812 tttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgac 33138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 871781 - 871905
Alignment:
Q  69 taaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaa 168  Q
    ||||| ||||||||||||  |||  ||||| ||||| ||| ||||||||||||||| |||||| || ||||||||||||||| ||||||||| ||||| |    
T  871781 taaatcgagtgttaactcgtcga--gtttaccgagtttacgtttttaggtaccaaa-tcgtgtcaactcggaggtaaactcgatttctggtaaaatcgga 871877  T
Q  169 aggtttgacgaatttgac-cgagttaac 195  Q
    | ||||||||| |||||| |||||||||    
T  871878 atgtttgacgagtttgactcgagttaac 871905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 23987613 - 23987743
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||| |||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| | ||||||||||| |||    
T  23987613 tccgcaaatcgagtgttacctctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaa-ttggtttctggtaaaat 23987709  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacact 198  Q
     | ||||||| |||| |||||| |||||||||||    
T  23987710 tggaaggtttaacgagtttgactgagttaacact 23987743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 9972783 - 9972870
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||||||  ||||| ||||| || ||||||||||||||||||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  9972783 tttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 9972870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 32889863 - 32889975
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||||  |||| ||||| ||| | ||||||||||||||||||||||| |  || ||||||||  ||||||||| |||    
T  32889863 tccgcaaatcgagtgttaactctccgaa--tttaccgagtttacgtgtttaggtaccaaaatcgtgttaactttgatgtaaactcaatttctggtaaaat 32889960  T
Q  165 cgaaaggtttgacga 179  Q
    |  ||||||||||||    
T  32889961 cagaaggtttgacga 32889975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 55165526 - 55165670
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagttaac---- 195  Q
    |||| ||| |||||| ||||||||||||| |||| | ||||||||||| | ||| ||||| ||||  || ||||||||| |||||| |||||||||        
T  55165526 gagtttacgtttttacgtaccaaaatcgtattaacttggaggtaaacttgatttatggtaaaatcagaatgtttgacgagtttgactcgagttaactcga 55165625  T
Q  196 ----actcaataaactcatgtaaactcgaccaagtttacatctaa 236  Q
        ||||||||||||| ||||||||||||||||||||| |||||    
T  55165626 tcaaactcaataaactcgtgtaaactcgaccaagtttacgtctaa 55165670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 23170824 - 23170738
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaaca 196  Q
    |||||||||  |||||  ||||||||||||||||||  ||||||| ||||  |||||||| ||||||||| ||||||||||||||||    
T  23170824 tttttaggtggcaaaaatgtgttaattcggaggtaatttcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaaca 23170738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 6487421 - 6487324
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| ||||||||||| |||||    
T  6487421 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 6487324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 32683807 - 32683666
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||||| || |  ||| ||||| ||| ||||||||||| |||||||||||||||  |||||||  |||||||||| || ||| | ||    
T  32683807 aaatcgagtgttaactctcagaga--ttaccgagt-tacgtttttaggtacaaaaatcgtgttaattatgaggtaagatcggtttctgttaaaattggaa 32683711  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| |||| |||||  ||||||||||||  ||||||| |||||    
T  32683710 ggtttaacgagtttgaatgagttaacactcggtaaactcgtgtaa 32683666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 40162789 - 40162886
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| ||||| ||||||||| ||||||||||||  |||  ||||| || ||||||||| |||||||||||||||||    
T  40162789 cgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaactcggttttcggtgaaatcggaaagtttgacgagtttgaccgagttaacac 40162886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 54561219 - 54561316
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||||||||  ||||| | ||| || ||||||||||||||||||| ||||  ||||| || ||||||||  |||||||||||||||||    
T  54561219 cgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgtgtttgaccgagttaacac 54561316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 8563461 - 8563342
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| ||||||| |  ||||| |||||||| |||||| |||||||||||| || |  ||||| || ||||||||| |||||||||||||||||      
T  8563461 cgagtttacgtttttagatgacaaaaacgtgttaactcggagataaactcggtttttgatgaaatcggaaagtttgacgagtttgaccgagttaacacgt 8563362  T
Q  200 aataaactcatgtaaactcg 219  Q
      ||||||| ||||||||||    
T  8563361 gttaaactcgtgtaaactcg 8563342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 54853256 - 54853120
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| |||||| |||| ||||| ||||||| || |||||||| ||||||||| ||| |||   ||    
T  54853256 aaatcgagtgttaactctccgaga--ttaccgagtttacctttttatgtacaaaaattgtgttaactctgaggtaaaatcggtttctcgtaaaattagaa 54853159  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    ||||| |||| |||||  ||||||||||||  |||||||    
T  54853158 ggtttaacgagtttgattgagttaacactcggtaaactc 54853120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 56424078 - 56423982
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaaca 196  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| | ||  ||||| || |||||| || ||||||| ||||||||    
T  56424078 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttagtgaaatcggaaagtttgatgagtttgaccaagttaaca 56423982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 26448630 - 26448728
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||| |||||||||||||  ||||| | ||| || |||||||||||||   ||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  26448630 tcgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaacttaatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 26448728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 29966455 - 29966401
Alignment:
Q  142 gtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaaca 196  Q
    ||||||||||||| ||||  |||||||| ||| ||||| ||||||||||||||||    
T  29966455 gtaaactcggtttttggtgaaatcgaaaagttcgacgagtttgaccgagttaaca 29966401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 40487761 - 40487703
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggt 159  Q
    |||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  40487761 gagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggt 40487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 14334394 - 14334491
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| ||||||||||||||||||| || || ||||| ||||||| | ||| ||||| ||||| || |||   | | |||||||||||||||||    
T  14334394 cgagtttacgtttttaggtaccaaaatcgcgtaaactcggacgtaaacttgttttttggtaaaatcggaaagttgacctagtttgaccgagttaacac 14334491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 41470419 - 41470370
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggt 159  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  41470419 tttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggt 41470370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 46863006 - 46862941
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    ||||||||| ||||| ||||||| |  || ||||| ||| ||||||||| ||||||||||||||||    
T  46863006 tttaggtactaaaattgtgttaactatgaagtaaattcgatttctggtaaaatcgaaaggtttgac 46862941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 39416 - 39266
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| |||||||||||||||||||||||||  | ||||| |||||||||||||||| ||||||||    
T  39416 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtaccaaaatcgtgttaaccctgaggtcaactcggtttctggtaaaatcgaaa 39319  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |||||||||| |||||| |||||| ||||  |||||||| |||||||||||||    
T  39318 ggtttgacgagtttgactgagttagcacttgataaactcgtgtaaactcgacc 39266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 230
Target Start/End: Complemental strand, 5651321 - 5651158
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||| || |||  ||||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||  |||    
T  5651321 tccgcaaatcgagtgttaacacttcga--gtttatcgattttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaat 5651224  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
     |||| ||||||||| |||||||||||||||||||| ||||||| |||||| ||| || |||||||    
T  5651223 tgaaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcggccgagtttac 5651158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 37014275 - 37014417
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| ||| ||||    
T  37014275 aaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaa 37014372  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| |||| |||||||||||||||||||  ||||||| |||||    
T  37014373 ggtttaacgagtttgaccgagttaacactcggtaaactcgtgtaa 37014417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 4240252 - 4240097
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||||||||||||||| || |  ||| ||||| ||| ||||||||| | ||||||||||||| || ||||||||||| |||||||||| |||    
T  4240252 tccgcaaattgagtgttaactctctgaga--ttaccgagtttacgtttttaggtgcaaaaatcgtgttaactctgaggtaaactccgtttctggtaaaat 4240155  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    || ||||||| |||| ||||||  |||||||||||  ||||||| |||||||||||||    
T  4240154 cggaaggtttaacgagtttgacaaagttaacactcggtaaactcgtgtaaactcgacc 4240097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 16548953 - 16548850
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac-cgagt 191  Q
    |||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||  ||||||||| |||||||| |||||||||||||||| |||||    
T  16548953 agtttatcgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcaatttctggtaaaatcgaaatgtttgacgaatttgactcgagt 16548854  T
Q  192 taac 195  Q
    ||||    
T  16548853 taac 16548850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 7125273 - 7125151
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  7125273 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 7125174  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  7125173 aacactcagtaaactcgtgtaaa 7125151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 39852786 - 39852933
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||| ||| ||||| |||    
T  39852786 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaat 39852883  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  39852884 tggaaggtttaacgagtttgacggagttaacactcggtaaactcgtgtaa 39852933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 13926347 - 13926494
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||||||| ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  13926347 tccgcaaatcgagtgttaactctccgaga--ttatcgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 13926444  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| | || ||||||  |||||||||||  ||||||| |||||    
T  13926445 tggaaggtttaaggagtttgactaagttaacactcggtaaactcgtgtaa 13926494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 28623275 - 28623160
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||||||||| ||| | ||||||| | |||| |||||||| |||||| |||||||| ||||||||| ||| | || ||||||||| ||||||||||||    
T  28623275 agtttatcgagtttacgtgtttaggtgctaaaaacgtgttaactcggagataaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagtt 28623176  T
Q  193 aacactcaataaactc 208  Q
    |||||||| |||||||    
T  28623175 aacactcagtaaactc 28623160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 1460899 - 1460791
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| ||||||||||| ||||| ||||||| || |||||||||||||||||||||| ||||| |||| || |||| |||||| ||||||||||||    
T  1460899 cgagtttacgtttttaggtacaaaaattgtgttaactcagaggtaaactcggtttctggtaaaatcggaaggcttaacgagtttgactgagttaacactc 1460800  T
Q  200 aataaactc 208  Q
      |||||||    
T  1460799 ggtaaactc 1460791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 29758673 - 29758834
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||||||||||||||||     ||||||||||||| ||| |||||||||| |||||||||||||| ||||||||| | | | ||||||||| |||    
T  29758673 tccgtaaattgagtgttaactcgtt--aagtttatcgagtttacgtttttaggtatcaaaatcgtgttaactcggaggtagatttgatttctggta-aat 29758769  T
Q  165 cgaaaggtttgacgaatttgac-cgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
    || || ||||||||| |||||| |||||||  ||||  ||||||  ||||||||||||| |||||||    
T  29758770 cggaatgtttgacgagtttgactcgagtta--actcggtaaacttgtgtaaactcgaccgagtttac 29758834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 4550044 - 4549912
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| | ||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  4550044 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtgtttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 4549947  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| |||| |||||| ||||||| ||||    
T  4549946 tggaaggtttaacgagtttgactgagttaatactc 4549912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 5949528 - 5949659
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||| |||||||||||| |  ||||| ||| ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  5949528 tccgcaaatcgagtattaactctccgaga--ttatc-agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 5949624  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| |||| |||||| ||||||||||||    
T  5949625 tggaaggtttaacgagtttgactgagttaacactc 5949659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 13999880 - 13999733
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  |||| ||||  |||||||||||||| ||||||||||||| |  ||| |||| ||||||||||||| |||    
T  13999880 tccgcaaatcgagtgttaaatctccgaga--ttatggagttgacatttttaggtacaaaaatcgtgttaactttgagataaaatcggtttctggtaaaat 13999783  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  13999782 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 13999733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 40013491 - 40013344
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| |||||||||| |||  ||||||||||||| || |||||||| ||||||||||||| |||    
T  40013491 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaagtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 40013394  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| || |  ||||| ||||||||||||  ||||||| |||||    
T  40013393 tggaaggtttaacaagattgactgagttaacactcggtaaactcgtgtaa 40013344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 2675175 - 2675078
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||| ||| ||||  |||||||| ||||||||| |||||||||||||||||    
T  2675175 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 2675078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 29716920 - 29716774
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| |||||||||||||||  |||||||  |||| ||| |||||||||| |||||||||||||| ||| ||||||||| | ||||||||| ||||  ||    
T  29716920 aaatcgagtgttaactctcc--aagtttacggagtttacgtttttaggtatcaaaatcgtgttaactcgaaggtaaacttgatttctggtaaaatcagaa 29716823  T
Q  170 ggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactc 218  Q
    |||||||||| || || || || ||||||   ||||||| |||||||||    
T  29716822 ggtttgacgagttggatcgggtgaacacttggtaaactcgtgtaaactc 29716774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 21238839 - 21238763
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||||    
T  21238839 caaaaacgtgttaactcggaggtaaactcggtttttggtaaaatcggaaagtttgacgagtttgaccgagttaacac 21238763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 34218436 - 34218590
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| ||||||||||||||| ||| ||  ||||| | ||| ||| ||||||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  34218436 tccgcaaattgagtgttaacactctga--gtttaccaagtttacgtttttagataccaaaatcgtgttaattcgaaggtaaattcggtttctgctaaaat 34218533  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
    |  ||||         |||||||||||||| ||||| |||| || ||||||||||||| |||||||    
T  34218534 cagaagg---------tttgaccgagttaatactcagtaaattcgtgtaaactcgaccgagtttac 34218590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 37798199 - 37798113
Alignment:
Q  122 aaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
    |||| |||||||| ||  ||||||||||  ||||||||| |||||||| ||||||||| |||||||||||||||||||  |||||||    
T  37798199 aaaaacgtgttaactcaaaggtaaactcaatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactcggtaaactc 37798113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 33892933 - 33892824
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactca 209  Q
    |||||||||  ||||| |||||||| ||||||||||||||| ||| || |  ||||| || ||||||||| |||||||||||||||||    |||||||     
T  33892933 tttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttgatgaaatcggaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 33892834  T
Q  210 tgtaaactcg 219  Q
    ||||||||||    
T  33892833 tgtaaactcg 33892824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 34909591 - 34909683
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagt 191  Q
    |||||| ||| |||||||||  ||||| |||||||||||||||||||||||||| | ||||  ||||| || |||||| || |||||||||||    
T  34909591 tcgagtttacgtttttaggtggcaaaaacgtgttaattcggaggtaaactcggtctttggtgaaatcggaaagtttgaggagtttgaccgagt 34909683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 21489892 - 21489965
Alignment:
Q  92 aagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatc 165  Q
    |||||||| || | |||||||||||||||||||||||||| |||||| || |||||| | ||||||||| ||||    
T  21489892 aagtttattgattttacatttttaggtaccaaaatcgtgtcaattcgaagataaacttgatttctggtaaaatc 21489965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 1152005 - 1151930
Alignment:
Q  139 gaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||| || ||||||||||||| ||| | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  1152005 gaggtgaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 1151930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 25868809 - 25868876
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || |||||||    
T  25868809 tttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgac 25868876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 31913526 - 31913628
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagtt 227  Q
    ||||||| | ||||||||||||| ||| ||||  |||||||| ||| | ||||||||| ||||||||||     |||||||  |||||||||||| ||||    
T  31913526 gtgttaacttggaggtaaactcgatttttggtgaaatcgaaatgttcgtcgaatttgatcgagttaacatgtgttaaactcgagtaaactcgaccgagtt 31913625  T
Q  228 tac 230  Q
    |||    
T  31913626 tac 31913628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 16497836 - 16497707
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactca 200  Q
    |||| ||| ||||||||| ||||||  ||||||||||  || |||||||| ||| || |  ||||| || ||||||||| ||||||||| ||||||        
T  16497836 gagtttacgtttttaggtgccaaaaatgtgttaattcaaagataaactcgatttttgctgaaatcggaatgtttgacgagtttgaccgacttaacatgtg 16497737  T
Q  201 ataaactcatgtaaactcgaccaagtttac 230  Q
     |||||||||||||| |||||  |||||||    
T  16497736 ttaaactcatgtaaaatcgacagagtttac 16497707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 1038 - 888
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||| ||| ||  ||||| ||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  1038 tccgcaaatcgagtgttaacactctga--gtttaccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcggtttctggtaaaat 941  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaact 217  Q
    || || |||||| || |||||||||||||||||| | ||||||| ||||||||    
T  940 cggaaagtttgatgagtttgaccgagttaacacttagtaaactcgtgtaaact 888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 16438673 - 16438835
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| |||||||||||||||||  ||||||||||| ||| ||||||||||| ||||||||||||| | |||||||||||||  |||||||| |||    
T  16438673 tccgcaaatcgagtgttaactctccga--gtttatcgagtttacgtttttaggtacaaaaatcgtgttaacttggaggtaaactcgacttctggtaaaat 16438770  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccaagttta 229  Q
    || |||||||||||| ||| | ||||||| |||||  ||||||| ||||||||||| | ||||||    
T  16438771 cggaaggtttgacgagtttaatcgagttagcactcggtaaactcgtgtaaactcgatcgagttta 16438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 31896052 - 31896199
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  31896052 tccgtaaatcgagtgttaaatctccgaga--ttatcgagtatacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 31896149  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  31896150 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 31896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 2606907 - 2607023
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    |||||| ||||||||||| |||| || |||||||||||| ||||||||| ||||  ||||||||| || |||||||||||||||||||||||||||| |     
T  2606907 tttaggcaccaaaatcgttttaactctgaggtaaactcgatttctggtaaaatcagaaggtttgatgagtttgaccgagttaacactcaataaactctta 2607006  T
Q  212 taaactcgaccaagttt 228  Q
    ||||||||||| |||||    
T  2607007 taaactcgaccgagttt 2607023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 31067847 - 31067988
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| ||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |||    
T  31067847 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaat 31067944  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
     | ||||||| |||| |||||| ||||||||||||  |||||||    
T  31067945 tggaaggtttaacgagtttgactgagttaacactcggtaaactc 31067988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 1463778 - 1463656
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  1463778 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 1463679  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  1463678 aacactcagtaaactcgtgtaaa 1463656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 6788093 - 6788215
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||||||    
T  6788093 agtttaccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagtt 6788192  T
Q  193 aacactcaataaactcatgtaaa 215  Q
    |||||||| ||||||| ||||||    
T  6788193 aacactcagtaaactcgtgtaaa 6788215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 31535161 - 31535068
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| |||||||||||||| |||||| ||||||| || |||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  31535161 tcgagtttacatttttaggtatcaaaattgtgttaactctgaggcaaactcgatttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 31535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 31975774 - 31975644
Alignment:
Q  76 agtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttg 175  Q
    ||||||||||||||||  |||||  |||| ||  | ||||||||||||||||||||||| || |||||||||||| ||||| ||| ||||| ||||||||    
T  31975774 agtgttaactctccga--gtttactgagtttatgtgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttcttgtaaaatcggaaggtttg 31975677  T
Q  176 acgaatttgaccgagttaacactcaataaactc 208  Q
    |||| |||||||||||||| ||||  |||||||    
T  31975676 acgagtttgaccgagttaagactcggtaaactc 31975644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 4200237 - 4200096
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||| ||||||| |  ||||||||| |||||||||| |||| |||||| |||||| || |||||||| ||||||||||||| |||    
T  4200237 tccgcaaatcgagtgttaaatctccgaga--ttatcgagtttacatttttaagtacaaaaatcatgttaactctgaggtaaaatcggtttctggtaaaat 4200140  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactc 208  Q
     | ||||||| |||| |||||| ||||||||||||  |||||||    
T  4200139 tggaaggtttaacgagtttgactgagttaacactcggtaaactc 4200096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 3000252 - 3000355
Alignment:
Q  112 tttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatg 211  Q
    ||||||||||||||||||||||| |||| |||||| ||| ||| ||||| |||||  | ||||||||| ||||| |||||||||||||||||||||| ||    
T  3000252 tttaggtaccaaaatcgtgttaactcgggggtaaattcgatttatggtaaaatcgggaagtttgacgagtttgatcgagttaacactcaataaactcgtg 3000351  T
Q  212 taaa 215  Q
    ||||    
T  3000352 taaa 3000355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 7497513 - 7497645
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| || |||||||||||||| |  ||||| ||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| |||    
T  7497513 tccgcaaatcgaatgttaactctccgaga--ttatcaagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaat 7497610  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| |||| |||||  ||||||||||||    
T  7497611 tggaaggtttaacgagtttgattgagttaacactc 7497645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 14262222 - 14262090
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||||| ||| ||| ||||||||||| ||||||||||||| || |||||||| ||| ||||||||| |||    
T  14262222 tccgcaaatcgagtgttaactctccgaga--ttatctagtttacttttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaat 14262125  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| |||| |||||| ||||||||||||    
T  14262124 tggaaggtttaacgagtttgactgagttaacactc 14262090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 10113887 - 10113772
Alignment:
Q  93 agtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagtt 192  Q
    |||||| ||||| ||| | ||||||| | |||| |||||||| ||||||||||||||| ||| ||||| ||||| || ||||||||| ||||||||||||    
T  10113887 agtttaccgagtttacgtgtttaggtcctaaaaacgtgttaactcggaggtaaactcgttttttggtaaaatcggaaagtttgacgagtttgaccgagtt 10113788  T
Q  193 aacactcaataaactc 208  Q
     | ||||| |||||||    
T  10113787 tagactcagtaaactc 10113772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 28900938 - 28900863
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttg 175  Q
    ||||| ||||| ||||||||||||||||||||||| || |||||||||||| ||||||||| ||||| ||||||||    
T  28900938 cgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttg 28900863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 34758865 - 34758733
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||| ||||||||||||| |  ||||| ||| ||| ||||||||||| ||||||||||||| || |||||||| |||||||||| || |||    
T  34758865 tccgcaaatcgagcgttaactctccgaga--ttatcaagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaat 34758768  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | ||||||| || | |||||| ||||||||||||    
T  34758767 tggaaggtttaacaagtttgactgagttaacactc 34758733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 30384850 - 30384703
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||  ||||||||||| ||||||||||||| ||  ||||||| || ||||||| || |||    
T  30384850 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttatgtttttaggtacaaaaatcgtgttaactctaaggtaaaatcagtttctgataaaat 30384753  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  30384752 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 30384703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 31996349 - 31996251
Alignment:
Q  99 tcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    |||||| ||| |||||||||  ||||| |||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  31996349 tcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 31996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 8779681 - 8779586
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaac 195  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || ||||||||| ||||||| |||||||    
T  8779681 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccaagttaac 8779586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 13461374 - 13461459
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgac 186  Q
    |||| ||| |||||| ||| ||||||||||| || ||||||||||||||||||| ||||| ||||  || ||||||||| ||||||    
T  13461374 gagtttacgtttttatgtatcaaaatcgtgtcaactcggaggtaaactcggtttttggtaaaatcagaatgtttgacgagtttgac 13461459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 21199564 - 21199650
Alignment:
Q  110 tttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaaca 196  Q
    |||||||||  ||||| |||||||| ||  ||||||||||| ||| ||||  ||||| || ||||||||| ||||||||||||||||    
T  21199564 tttttaggtggcaaaaccgtgttaactccaaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaaca 21199650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 34773873 - 34773947
Alignment:
Q  140 aggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
    ||||||| ||||||||||||| ||| | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  34773873 aggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 34773947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 7835464 - 7835387
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgac 177  Q
    ||||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||  ||||| || |||||||    
T  7835464 cgagtttacgtttttaggtggcaaaaacgtgttaagtcggaggtaaactcggtttttggtgaaatcggaaagtttgac 7835387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 12028996 - 12029105
Alignment:
Q  121 caaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcga 220  Q
    ||||| |||||||| |  |||||||||||| ||| |  |  |||||||| ||||||||| ||||||  |||||||||  | ||||||| |||||||||||    
T  12028996 caaaaacgtgttaactttgaggtaaactcgatttttattgaaatcgaaatgtttgacgagtttgacatagttaacacgtattaaactcgtgtaaactcga 12029095  T
Q  221 ccaagtttac 230  Q
    || |||||||    
T  12029096 ccgagtttac 12029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 21010950 - 21010883
Alignment:
Q  127 cgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaa 194  Q
    |||||||||||| |||| |||||||||| ||||  |||| ||| ||||||||| ||| ||||||||||    
T  21010950 cgtgttaattcgaaggtcaactcggtttttggtgaaatcaaaatgtttgacgagtttaaccgagttaa 21010883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 33641316 - 33641267
Alignment:
Q  181 tttgaccgagttaacactcaataaactcatgtaaactcgaccaagtttac 230  Q
    ||||||||||||||||||| |||||||| || |||||| ||| |||||||    
T  33641316 tttgaccgagttaacactcgataaactcgtgcaaactctaccgagtttac 33641267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 57850 - 57695
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||||||||| ||| |||    
T  57850 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaat 57753  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgacc 222  Q
    |  ||||||| | || |||||  ||||||||||||  ||||||| |||||||||||||    
T  57752 cagaaggtttaatgagtttgattgagttaacactcggtaaactcgtgtaaactcgacc 57695  T

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Target: scaffold0013 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 89247 - 89379
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    ||||||||| |||||||||||||  ||  ||||||||||| ||  |||||||||||||| |||||||||| | | ||||||||||| ||||||||| |||    
T  89247 tccgtaaatcgagtgttaactctgtga--gtttatcgagtttaagtttttaggtaccaatatcgtgttaacttgaaggtaaactcgatttctggtaaaat 89344  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactc 199  Q
     | |||||||||||| ||||| |||||||||||||    
T  89345 tggaaggtttgacgagtttgatcgagttaacactc 89379  T

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Target: scaffold0543 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 10940 - 11087
Alignment:
Q  65 tccgtaaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataat 164  Q
    |||| |||| ||||||||||||||||| |  ||| ||||| ||||||||||||||| ||||||||||||| || |||||||| ||| ||| ||||| |||    
T  10940 tccgcaaatcgagtgttaactctccgaga--ttaccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaat 11037  T
Q  165 cgaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaa 214  Q
     | ||||||| |||| |||||| ||||||||||||  ||||||| |||||    
T  11038 tggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 11087  T

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Target: scaffold1504 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 199
Target Start/End: Original strand, 1287 - 1414
Alignment:
Q  70 aaattgagtgttaactctccgaaagtttatcgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaa 169  Q
    |||| ||||||||||||||||| |  ||| ||||| ||| ||||||||||| ||||||||||||| || |||||||| ||||||||| ||| ||| | ||    
T  1287 aaatcgagtgttaactctccgaga--ttaccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttcttgtaaaattggaa 1384  T
Q  170 ggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| |||| |||||| ||||||||||||    
T  1385 ggtttaacgagtttgactgagttaacactc 1414  T

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Target: scaffold0573 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 8856 - 8931
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttg 175  Q
    ||||| ||||| ||||||||||||||||||||||| || |||||||||||| ||||||||| ||||| ||||||||    
T  8856 cgagtttacatgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttg 8931  T

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Target: scaffold0383 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 16754 - 16684
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacact 198  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  16754 gtgttaactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 16684  T

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Target: scaffold0152 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 20990 - 20920
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacact 198  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  20990 gtgttaactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 20920  T

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Target: scaffold0152; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 28811 - 28881
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacact 198  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  28811 gtgttaactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 28881  T

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Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 1727 - 1796
Alignment:
Q  128 gtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacac 197  Q
    ||||||| ||||||||||||||| ||| ||||  ||||| || ||||||||| |||||||||||||||||    
T  1727 gtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 1796  T

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Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 1367 - 1486
Alignment:
Q  100 cgagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaacactc 199  Q
    ||||| ||| |||||||||  ||||| | |||||| | ||||||||||||||||| | ||  ||||| || ||||||||| ||| |||||||||||||      
T  1367 cgagtttacgtttttaggtggcaaaaacatgttaacttggaggtaaactcggtttttagtgaaatcggaaagtttgacgagtttaaccgagttaacacgt 1466  T
Q  200 aataaactcatgtaaactcg 219  Q
      ||||||| ||||||||||    
T  1467 gttaaactcgtgtaaactcg 1486  T

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Target: scaffold0246; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 25700 - 25642
Alignment:
Q  101 gagtctacatttttaggtaccaaaatcgtgttaattcggaggtaaactcggtttctggt 159  Q
    |||| ||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  25700 gagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggt 25642  T

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Target: scaffold0347 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 15132 - 15204
Alignment:
Q  122 aaaatcgtgttaattcggaggtaaactcggtttctggtataatcgaaaggtttgacgaatttgaccgagttaa 194  Q
    ||||||||||||| || |||||||| ||||||| ||||| ||| | ||||||| |||| |||||| |||||||    
T  15132 aaaatcgtgttaactctgaggtaaaatcggtttatggtaaaattggaaggtttaacgagtttgactgagttaa 15204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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