View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_125 (Length: 282)
Name: NF20633_high_125
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_125 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 29187308 - 29187564
Alignment:
| Q |
11 |
cagagagaaatcattgcgatttggaagaattttgtgttggagaggaagaaattgaatgataagatgaatggtgtttgctagaattagcttggaatggaac |
110 |
Q |
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| T |
29187308 |
cagagagaaatcattgcgatttggaagaagtttgtgttggagaggaagaaattgaatgataagatgaatggtgtttgctagaattagcttggaatggaac |
29187407 |
T |
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| Q |
111 |
aagggtgtgccgtgtctctctatttatgcttttataatttcttttcttgttaagaaagtaattaaatacatttttattgagtcaagtcatttctatgatt |
210 |
Q |
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| T |
29187408 |
aagggtgtgccgtgtctctctatttatgcttttataatttcttttcttgttaagaaagtaattaaatacatttttattgagtcaagtcatttctatgatt |
29187507 |
T |
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| Q |
211 |
ctcatgatgagtggttacaagaaaaacaaaattatgtttatacttgataagcatggt |
267 |
Q |
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| T |
29187508 |
ctcatgatgagtggttacaagaaaaacaaaatcatgtttatactttataagcatggt |
29187564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 29181074 - 29181329
Alignment:
| Q |
11 |
cagagagaaatcattgcgatttggaagaattttgtgttggagaggaagaaattgaatgataagatgaatggtgtttgctagaattagcttggaatggaac |
110 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29181074 |
cagagagaaattactgcgatttggaagaagtttgtgttggataggaagaagctgaatgataagatgaatggtgtttgctagaatcagcttggaatggaac |
29181173 |
T |
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| Q |
111 |
aagggtgtgccgtgtctctctatttatgcttttataatttcttttcttgttaagaaagtaattaaatacatttttattgagtcaagtcatttctatgatt |
210 |
Q |
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| T |
29181174 |
aagggtgtgtcgtgtctctctatttatgcttttatagcttcttttcttgttaaggaagtaattaagtacatttttattgagtcaagtcatttctatgatt |
29181273 |
T |
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| Q |
211 |
ctcatgatgagtggttacaagaaaaacaaaattatgtttatacttgataagcatgg |
266 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
29181274 |
ttcatgatgagtggttacaagaaaaacaaaatcatgtttatactttataagcatgg |
29181329 |
T |
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