View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_128 (Length: 276)
Name: NF20633_high_128
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_128 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0112 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 15617814 - 15617556
Alignment:
| Q |
18 |
attgctatcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggt |
117 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15617814 |
attgctattatatgatcattacgaactggatttgttaaaatgttattgtgaatagctaccggaatagtagcattagctacataccaatcctccatatggt |
15617715 |
T |
|
| Q |
118 |
gacaagctcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctctagaggatagctgcaacccg |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
15617714 |
gacaagctcggtctactatctgagcacatgtttatgtgacatcttgccaaagtttaagatttctatgcttctgaaggctctagaggatagctgcaactcg |
15617615 |
T |
|
| Q |
218 |
ttggtcaaattcttgcgagagctgatgtgacaattcaaagatggcatcaactactgaat |
276 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15617614 |
ttggtcaaattcttgcgagagcttatgtgacaattcaaagatggcatcaactactgaat |
15617556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 26131456 - 26131219
Alignment:
| Q |
30 |
tgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagctcggt |
129 |
Q |
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| T |
26131456 |
tgatcattatgaactgaatttattgaaatgttgtttcgactagctaccggaagagtaggattagctgcatgccaatcctccataaggtgacaagctcgat |
26131357 |
T |
|
| Q |
130 |
ctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctctagaggatagctgcaacccgttggtcaaattc |
229 |
Q |
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|||||| |||||||||||| |||| | |||||||||||||| |||||| |||||||| ||||||| | |||| |||||||| ||||| ||| ||| |
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| T |
26131356 |
ctactacatgagcacatgtttctgtggcctcttgccaaagtttgagatttctatgcttccaaaggctccaaaggacagctgcaaatcgttgaccaagttc |
26131257 |
T |
|
| Q |
230 |
ttgcgagagctgatgtgacaattcaaagatggcatcaa |
267 |
Q |
| |
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|||||||||||||||| ||||||| || |||||||||| |
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| T |
26131256 |
ttgcgagagctgatgtaacaattcgaaaatggcatcaa |
26131219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 43218559 - 43218807
Alignment:
| Q |
28 |
tatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagctcg |
127 |
Q |
| |
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||||||||||| ||| | |||| || ||||||| || || |||||||||||| ||||||||||||| ||| ||||||||| || ||||| |||| || |
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| T |
43218559 |
tatgatcattatgaacagaatttattgaaatgttgtttcgattagctaccagaagagtagcattagctgcatgccaatcctctatgaggtgaaaagcccg |
43218658 |
T |
|
| Q |
128 |
gtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctctagaggatagctgcaacccgttggtcaaat |
227 |
Q |
| |
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||||||| ||||| ||||||||||| |||||||||||||| |||||| |||||| | ||||||| | ||| ||||||||| ||||| ||| | |
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| T |
43218659 |
atctactacaagagcatatgtttatgtggtctcttgccaaagtttgagatttctatgctcccaaaggctccaaagggtagctgcaaatcgttgaccaagt |
43218758 |
T |
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| Q |
228 |
tcttgcgagagctgatgtgacaattcaaagatggcatcaactactgaat |
276 |
Q |
| |
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|||||||||||||||||| |||||| || |||||||||||| |||||| |
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| T |
43218759 |
tcttgcgagagctgatgtagcaattcgaaaatggcatcaactgctgaat |
43218807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 41418308 - 41418480
Alignment:
| Q |
25 |
tcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagc |
124 |
Q |
| |
|
|||| ||||||||||||| || ||||||| || |||| ||| | ||||| || ||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
41418308 |
tcatctgatcattacgaactgaatttgttgaagtgttgttgcaactagctgccggaatagtagtgttagctgcataccaatcctccataaggtgacaagc |
41418407 |
T |
|
| Q |
125 |
tcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctc |
197 |
Q |
| |
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||| || |||| ||||||| |||| |||||||||||||||||| || |||||| |||||||| ||||||| |
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| T |
41418408 |
tcgatcgactacatgagcacaagtttctgtgacatcttgccaaagcttgagatttctatgcttccaaaggctc |
41418480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 34164 - 33922
Alignment:
| Q |
24 |
atcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaag |
123 |
Q |
| |
|
|||||||||||||||| || || ||||||| || |||| ||| || ||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||| |
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| T |
34164 |
atcatatgatcattacaaactgaatttgttgaagtgttgttgcgactagctgccagaatagtaacgttaactgcataccaatcctccataaggtgacaag |
34065 |
T |
|
| Q |
124 |
ctcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctctagaggatagctgcaacccgttggtc |
223 |
Q |
| |
|
|||| || |||| ||||||| ||||||||||||||||||||||| || |||||| |||||||| ||||||| | |||| | ||||| ||||| |
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| T |
34064 |
ctcgatcgactacatgagcacaagtttatgtgacatcttgccaaaggttgagatttctatgcttccaaaggctccataggacaattgcaaatcgttgact |
33965 |
T |
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| Q |
224 |
aaattcttgcgagagctgatgtgacaattcaaagatggcatca |
266 |
Q |
| |
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||||||||| || || |||||| |||||| || ||||||||| |
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| T |
33964 |
aaattcttgtgaaagttgatgtagcaattcgaatatggcatca |
33922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 20251018 - 20250812
Alignment:
| Q |
70 |
tagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagctcggtctactatcggagcacatgtttatgtgacatcttgccaaag |
169 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||| |||||||||||| ||||| |||| | |||||||| |||||||||||| |||| | ||||||||||| |
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|
| T |
20251018 |
tagctaccggaagagtagcattagctgcatgccaatcctccatgaggtgaaaagcccaatctactataagagcacatgtttttgtgccctcttgccaaag |
20250919 |
T |
|
| Q |
170 |
tttaagatttatatgcttctgaaggctctagaggatagctgcaacccgttggtcaaattcttgcgagagctgatgtgacaattcaaagatggcatcaact |
269 |
Q |
| |
|
||| |||||| ||||||| ||||||| | ||| ||||||||| ||||| ||| ||||||||| ||||||||| |||||| || |||||||||||| |
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| T |
20250918 |
tttgagatttctatgctttcaaaggctccaaagggtagctgcaaatcgttgaccaagttcttgcgaaagctgatgtagcaattcgaaaatggcatcaact |
20250819 |
T |
|
| Q |
270 |
actgaat |
276 |
Q |
| |
|
|||||| |
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|
| T |
20250818 |
gctgaat |
20250812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 7642943 - 7643112
Alignment:
| Q |
107 |
ctccatatggtgacaagctcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctctagaggata |
206 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| ||| |||||||| ||||||||| || |||| || | |||| |||||||| ||||||| |||||| | |
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|
| T |
7642943 |
ctccataaggttacaagctcgatctactacatgagtacatgtttctgtgacatcctgtcaaaacttgaaatttctatgcttccaaaggctcgagaggaca |
7643042 |
T |
|
| Q |
207 |
gctgcaacccgttggtcaaattcttgcgagagctgatgtgacaattcaaagatggcatcaactactgaat |
276 |
Q |
| |
|
||||||| | ||| |||||||| ||||||||||||| || ||| || |||||||||||| |||||| |
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|
| T |
7643043 |
gctgcaaatcattgaccaaattctcgcgagagctgatgcaacgatttgaaaatggcatcaactgctgaat |
7643112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 8790061 - 8789898
Alignment:
| Q |
25 |
tcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagc |
124 |
Q |
| |
|
|||| ||||| ||||||| || ||||||| || ||| || ||| ||||| || |||||||||| |||||| ||||||||||||||||| |||||||||| |
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|
| T |
8790061 |
tcatctgatcgttacgaactgaatttgttgaagcgttgttatgactagctgccggaatagtagcgttagctgcataccaatcctccataaggtgacaagc |
8789962 |
T |
|
| Q |
125 |
tcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttc |
188 |
Q |
| |
|
||| || |||| ||||||| ||||||||||||||||||||||| || |||||| |||||||| |
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|
| T |
8789961 |
tcgatcgactacatgagcacaagtttatgtgacatcttgccaaagcttgagatttctatgcttc |
8789898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 44036873 - 44036980
Alignment:
| Q |
25 |
tcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagc |
124 |
Q |
| |
|
|||| ||||||||| ||| || ||||||| ||||||| ||| || ||||| || | |||||| ||| || |||| |||||||||||| |||||||||| |
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|
| T |
44036873 |
tcatctgatcattatgaactgaatttgttgaaatgttgttgcgactagctgccgaagtagtagggttaactgcatatcaatcctccataaggtgacaagc |
44036972 |
T |
|
| Q |
125 |
tcggtcta |
132 |
Q |
| |
|
||| |||| |
|
|
| T |
44036973 |
tcgatcta |
44036980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 40290292 - 40290340
Alignment:
| Q |
79 |
gaatagtagcattagctacataccaatcctccatatggtgacaagctcg |
127 |
Q |
| |
|
||||||| ||||||||| |||| |||||||| ||| ||||||||||||| |
|
|
| T |
40290292 |
gaatagttgcattagctgcatatcaatcctcaataaggtgacaagctcg |
40290340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 16842 - 17002
Alignment:
| Q |
25 |
tcatatgatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagc |
124 |
Q |
| |
|
|||||||||||||||||| || ||||||| || |||| ||| || ||||| || |||||||| | |||||| |||||||||||||| ||||||||||| |
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|
| T |
16842 |
tcatatgatcattacgaactgaatttgttgaagtgttgttgcgactagctgccggaatagtaacgttagctgcataccaatcctcc---tggtgacaagc |
16938 |
T |
|
| Q |
125 |
tcggtctactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttc |
188 |
Q |
| |
|
||| || || | ||||||| |||||||||| | ||||||||| || |||||| |||||||| |
|
|
| T |
16939 |
tcgatcgacaacatgagcacaagtttatgtgatgttttgccaaagcttgagatttctatgcttc |
17002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 51748672 - 51748506
Alignment:
| Q |
31 |
gatcattacgaattggatttgttaaaatgttattgtgaatagctaccagaatagtagcattagctacataccaatcctccatatggtgacaagctcggtc |
130 |
Q |
| |
|
|||||||||||| || |||| || ||||||| || || | |||||| || |||||| |||||| ||| |||||||||||| |||||||| |||| || |
|
|
| T |
51748672 |
gatcattacgaactgaatttattgaaatgttgtttcgactggctaccgaaagagtagcgttagctgcatgtcaatcctccataaggtgacaaactcgatc |
51748573 |
T |
|
| Q |
131 |
tactatcggagcacatgtttatgtgacatcttgccaaagtttaagatttatatgcttctgaaggctc |
197 |
Q |
| |
|
||||| || || |||||| |||| ||||||||| | |||| |||||| |||||||| ||||||| |
|
|
| T |
51748572 |
tactacatgaacatatgtttttgtggcatcttgcctaggtttgagatttctatgcttcgaaaggctc |
51748506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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