View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_130 (Length: 272)
Name: NF20633_high_130
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_130 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 7237743 - 7237982
Alignment:
| Q |
19 |
cacagatcaagtgggcaacacttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
118 |
Q |
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| T |
7237743 |
cacagatcaagtgggcaacacttaaattgaccaaaaagaaaagtattcacttaaaatcattatataaatcaaggattaattacacataaatagaatacaa |
7237842 |
T |
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| Q |
119 |
gttgacaacaagcttcaccgcttggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
218 |
Q |
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| T |
7237843 |
gttgacaacaagcttcgccgcttggtcttttgggtggcaaaaccattaagtaaggttttgcagtcaagactagaccttgtatggagactataacctgtag |
7237942 |
T |
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| Q |
219 |
aaatattgttgaaacacgtcgaacccaacactcatttttg |
258 |
Q |
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| T |
7237943 |
aaatattgttgaaacacgtcgaacccaacactcatttttg |
7237982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 41432227 - 41432175
Alignment:
| Q |
166 |
aagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
218 |
Q |
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| T |
41432227 |
aagtaaggctttgcattcaagattagaccttgtatggagactagaacttgtag |
41432175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 33370517 - 33370465
Alignment:
| Q |
166 |
aagtaaggttttgcagtcaagactagactttgtatggagactataacctgtag |
218 |
Q |
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| T |
33370517 |
aagtaaggctttgcattcaagattagaatttgtatggagactagaacctgtag |
33370465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 5838958 - 5838999
Alignment:
| Q |
179 |
cagtcaagactagactttgtatggagactataacctgtagaa |
220 |
Q |
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| T |
5838958 |
cagtcaagactagaccttgaatggagactagaacctgtagaa |
5838999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 18670979 - 18671007
Alignment:
| Q |
86 |
atcaaggattaattacacataaatagaat |
114 |
Q |
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| T |
18670979 |
atcaaggattaattacacataaatagaat |
18671007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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