View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_14 (Length: 655)
Name: NF20633_high_14
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 226 - 655
Target Start/End: Complemental strand, 39772878 - 39772448
Alignment:
| Q |
226 |
cctccgaaacaaaaacctcatcaacagtcctcaactaaccctatccacattcccccttttaagctcatgtctcccccacgcgccactcaaaaccacagac |
325 |
Q |
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| T |
39772878 |
cctccgaaacaaaaacctcatcaacagtcctcaactaaccctatccacattcccccttttaagctcatgcctcccccacgcgccactcaaaaccacagac |
39772779 |
T |
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| Q |
326 |
agcgcgtggatggaaacccacttgttagaagtgaaacaagctttaggttaccctctccaaccctttgatgaaatgcttggtgaagaagataaccctgcta |
425 |
Q |
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| T |
39772778 |
agcgcgtggatggaaacccacttgttagaagtgaaacaagcgttaggttaccctctccaaccctttgatgaaatgcttggtgaagaagataaccctgcta |
39772679 |
T |
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| Q |
426 |
agcaatttgatacgctgttgtatttggcgtttcagcatcccacttgccgggggaaggggaggcacgtgaggtctgcgcattcaaggttgnnnnnnnnggg |
525 |
Q |
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| T |
39772678 |
agcaatttgatacgctgttgtatttggcgtttcagcatcccacttgccgggggaaggggaggcacgtgaggtctgcgcattcaaggttgttttttttggg |
39772579 |
T |
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| Q |
526 |
gcagtatgtgattgagcttgcgttaggggagtttttcttgcagaggtatccgagggaggcggtggggccgatggggtagagggtttttggattggt-ggg |
624 |
Q |
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| T |
39772578 |
gcagtatgtgattgagcttgcgttaggggagtttttcttgcagaggtatccgagggaggcggtggggccgatgagggagagggtttttggattggtgggg |
39772479 |
T |
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| Q |
625 |
aagcatatgttgcctaagtggattaaaaatg |
655 |
Q |
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| T |
39772478 |
aagcataggttgcctaagtggattaaaaatg |
39772448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 39773103 - 39772944
Alignment:
| Q |
1 |
ctcattctcattctcattctcaacctcaatatctcaaaacccaattcaattccccaccaacaaaaccataacaccccacaaaaccctccacatttatgca |
100 |
Q |
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| T |
39773103 |
ctcattctcattctcattctcaacctcaatctctcaaaacccaattcaattccccaccaacaaaaccataacaccccaaaaaaccctccacatttatgca |
39773004 |
T |
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| Q |
101 |
ctaaccacaaacccacttcctccaaacagtcctcaacgacttctcaaagaactcgaacag |
160 |
Q |
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| T |
39773003 |
ctaaccacaaacccacttcctcccaacagtcctcaacgacttctcaaagaactcgaacag |
39772944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 465
Target Start/End: Original strand, 5684856 - 5684908
Alignment:
| Q |
413 |
gataaccctgctaagcaatttgatacgctgttgtatttggcgtttcagcatcc |
465 |
Q |
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| T |
5684856 |
gataatcctgctaaacagtttgatactttgttgtatttggcttttcagcatcc |
5684908 |
T |
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