View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_142 (Length: 261)
Name: NF20633_high_142
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_142 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 46642133 - 46641875
Alignment:
| Q |
3 |
agcagcagcacagaggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagag |
102 |
Q |
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| T |
46642133 |
agcagcagcacagaggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagag |
46642034 |
T |
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| Q |
103 |
tgttccttgtgttcaagttgagaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagag |
202 |
Q |
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| T |
46642033 |
tgttccttgtgttcaagttcagaaatgcaaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggcgacggtagag |
46641934 |
T |
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| Q |
203 |
gaaggtgagcatggcctaaagacaaatgatccatgtctagcatctgctactcaggaagt |
261 |
Q |
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| T |
46641933 |
gaaggtgagcatggcctaaagacaaatgatccatgtctagcatctgctactcaggaagt |
46641875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 46619952 - 46620183
Alignment:
| Q |
30 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
129 |
Q |
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| T |
46619952 |
cttcttcagcagacagaagtgtggaagaggataatggaaaaagcattatcaacgacagctatcaacacacgagtgtttcttgtgtcaaagttgaaaaatc |
46620051 |
T |
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| Q |
130 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
229 |
Q |
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| T |
46620052 |
tgaatctttcaccttcaacatacctcaggtaccatcgaattctgaaaatagcaaaacagtggcaatggcagctgaagatgagcaaggcctaacggcaaaa |
46620151 |
T |
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| Q |
230 |
gatccatgtctagcatctgctactcaggaagt |
261 |
Q |
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| T |
46620152 |
aatccatgtctaacatatgcttctcaggaagt |
46620183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 46638670 - 46638901
Alignment:
| Q |
30 |
cttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttcaagttgagaaatg |
129 |
Q |
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| T |
46638670 |
cttcttcagcagacagaagtgtggaagaggatgacagaaaaagcattatcaacaacagctatcaacgcacgagtgtttcttgtgttaaagttgaaaaatc |
46638769 |
T |
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| Q |
130 |
caaatcgtccaccttcaacagacccaaggttccatcgaaatctgtaaatatcaaaacaatggtgacggtagaggaaggtgagcatggcctaaagacaaat |
229 |
Q |
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| T |
46638770 |
tgaatctttcaccttcaacatacctcaggcaccatcgaagtctgaaaatagcaaaacagtagcaatggcagccgaaaatgagcaaggcctaaaggcaaaa |
46638869 |
T |
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| Q |
230 |
gatccatgtctagcatctgctactcaggaagt |
261 |
Q |
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| T |
46638870 |
gatccatgtctaacatctgcttctcaggaagt |
46638901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 46630436 - 46630548
Alignment:
| Q |
17 |
ggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttc |
116 |
Q |
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||||||| |||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||| || |||||| | ||| |||||| |||||||| |
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| T |
46630436 |
ggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataatgaaaaaaacattctcaatgatagttatcgatgcatgagtgtctcttgtgtta |
46630535 |
T |
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| Q |
117 |
aagttgagaaatg |
129 |
Q |
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| T |
46630536 |
aaattgagaaatg |
46630548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 18375648 - 18375536
Alignment:
| Q |
17 |
ggaagtttcactgcttctttagcacacagaagtgtggaagagaataatgaaaaaagcattctcaaggactgttatcaacgcaagagtgttccttgtgttc |
116 |
Q |
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||||||| |||||||||| |||| |||||| |||||||||||||||| |||| | ||||| ||| ||| |||||| | ||| |||||| |||||||| |
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| T |
18375648 |
ggaagttcaactgcttcttcagcaaacagaaatgtggaagagaataataaaaacaacattcacaatgacagttatcgatgcatgagtgtctcttgtgtta |
18375549 |
T |
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| Q |
117 |
aagttgagaaatg |
129 |
Q |
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| T |
18375548 |
aaattgagaaatg |
18375536 |
T |
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