View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_146 (Length: 258)
Name: NF20633_high_146
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_146 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 54241880 - 54242068
Alignment:
| Q |
52 |
tctccaagaagggaaaagtggcaaaaaatcattaggaagtcatgtgttttgattgtattacaccttgcatgtgtgtgggttcctcataccaattaagctt |
151 |
Q |
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| T |
54241880 |
tctccaagaagggaaaagtggcaaaa-atcattaggaagtcatgtgttttgattgtattacaccttgcatgtgtgtgggttcctcataccaattaagctt |
54241978 |
T |
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| Q |
152 |
ctctgtattgcagtctagagtctagacacagagtgttaaaagaccaacactcccaaatatggagatctatggtggggttctcattaattt |
241 |
Q |
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| T |
54241979 |
ctgtatattgcagtctagagtctagacacagagtgttaaaaggccaaaactcccaaatatggagatctatggtggggttctcattaattt |
54242068 |
T |
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