View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_150 (Length: 252)
Name: NF20633_high_150
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_150 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 42845780 - 42846023
Alignment:
| Q |
9 |
caagaatatacatgcacaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtc |
108 |
Q |
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| T |
42845780 |
caagaatatacatgcacaagcagctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtc |
42845879 |
T |
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| Q |
109 |
aatgaaattgctgagcactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacaggg |
208 |
Q |
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| T |
42845880 |
aatgaaattgctgagcactcaaagaaagaggcatggataacatgcttgcagaacttattcagagtttcctacctgaatctactcgttgatgcacacaggg |
42845979 |
T |
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| Q |
209 |
ctactgatcttgtgtggctgagagatgtttcacctgactaagca |
252 |
Q |
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| T |
42845980 |
ctactgatcttgtgtggctgagagatgtttcacctgactaagca |
42846023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 41979923 - 41980056
Alignment:
| Q |
30 |
agctaaggcagggaagagagaaaagacagaaatgacaatggattttttgtactgggaggctatgagccgtgcaaacgtcaatgaaattgctga-gcactc |
128 |
Q |
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| T |
41979923 |
agctacggctgggaagagagaaaagacagaaagcaacatggactcattggactgggaagctgtgagacgggcaaacgtcaaggaaattgctgatgcaatc |
41980022 |
T |
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| Q |
129 |
aaagaaagaggcatggataacatgcttgcagaac |
162 |
Q |
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| T |
41980023 |
aaagagaggggcatgaacaacatgcttgctgaac |
41980056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 41980173 - 41980245
Alignment:
| Q |
180 |
cctgaatctactcgttgatgcacacagggctactgatcttgtgtggctgagagatgtttcacctgactaagca |
252 |
Q |
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| T |
41980173 |
cctgaatctactcgttgaaaaacacggggctattgatctcgagtggcttagagatgttccacctgaccaagca |
41980245 |
T |
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