View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_154 (Length: 250)
Name: NF20633_high_154
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_154 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 17767380 - 17767618
Alignment:
| Q |
13 |
aatatcccactttatttatcgctttaataaacatatatctttttaataaaacatggtaaagttttcacttttgattctcttaacatatacaatattacac |
112 |
Q |
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| T |
17767380 |
aatataccactttatttatcgctttaataaacatatatctttttaataaaatatggtaaagttttcacttttgattctcttaacatatacaatattacac |
17767479 |
T |
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| Q |
113 |
atgttagactattaaattattaatttataatagaaccaaaccgccattatgtttttaaaaagtacatatcttacattgatttgctgaaaattaacattaa |
212 |
Q |
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| T |
17767480 |
atgttagactattaaattattaatttataatagaaccaaaccgccattatgtttttaaaaggtacatatcttacattgatttgctgaaaattaatattaa |
17767579 |
T |
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| Q |
213 |
caaataacaagtaacaacacaatattc-tttcaaaataa |
250 |
Q |
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| T |
17767580 |
caactaacaagtaaaaacacaatattcttttcaaaataa |
17767618 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 9749656 - 9749627
Alignment:
| Q |
92 |
ttaacatatacaatattacacatgttagac |
121 |
Q |
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| T |
9749656 |
ttaacatatacaatattacacatgttagac |
9749627 |
T |
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