View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_17 (Length: 630)
Name: NF20633_high_17
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Complemental strand, 4189910 - 4189312
Alignment:
| Q |
18 |
tgtgtgtcacccaaattaaaaagaaagagtgaataataactttttcttatcttttctactatctatatatccatcacagaacaaaacttccattgctctg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189910 |
tgtgtgtcacccaaattaaaaagaaatagtgaataataactttttcttatcttttctactatctatatatccatcacagaacaaaacttccattgctctg |
4189811 |
T |
|
| Q |
118 |
ttctgtttctgtttctctttgttctccctcgtgtaacaatggcattcacacgtgccacgctcatgctagccatgtccctttctctggtagtaatgtccat |
217 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189810 |
ttctgtt-ctgtttctctttcttctccctcgtgtaacaatggcattcacacgtgccacgctcatgctagccatgtccctttctctggtagtaatgtccat |
4189712 |
T |
|
| Q |
218 |
agcccaagcaccctcccctggacccatcatgctgcacactccttcacctgcctcctcccctgaatcattgccaccagaaagccc------------gagc |
305 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4189711 |
agcccaagcaccctctcctggacccatcatgctgcacactccttcacctgcctcctcccctgaatcattgccaccagaaagcccaagccagagcccgagc |
4189612 |
T |
|
| Q |
306 |
atgagcccaagcatgaacatgagtccaagtatgagcccacctttccctactgctgcttcaccatctccagcttcttcaccgtcaccttccaccggagaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189611 |
atgagcccaagcatgaacatgagtccaagtatgagcccacctttccctactgatgcttcaccatctccagcttcttcaccgtcaccttccaccggagaat |
4189512 |
T |
|
| Q |
406 |
caatgtctgataacccagttgcttcaagtccaagcaacgcggttgttcgcagaagcagctttttcatgctaccattctttgccggtgctgcactgcttct |
505 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4189511 |
caatgtctgataatccagttgcttcaagtccaagcaacgcggttgttcgcagaagcagctttttcatgctaccattctttgctggtgctgcactgcttct |
4189412 |
T |
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| Q |
506 |
tgcataaacaaagttgagagttcttgattcaacttcatgtagaccaagtcacaaagatatgcaatcgtgtatcttattttgttttcctttctagcttcta |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189411 |
tgcataaacaaagttgagagttcttgattcaacttcatgtagaccaagtcacaaagatatgcaatcgtgtatcttattttgttttcctttctagcttcta |
4189312 |
T |
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