View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_171 (Length: 245)
Name: NF20633_high_171
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_171 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 500278 - 500052
Alignment:
| Q |
1 |
aagcacaaacccctaatcttcttctacattcttcctccaaatggtttctcacaccaccaaaccaaagtctcggagtccaaaaagacgtgccccccttcac |
100 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
500278 |
aagcaccaaaccctaatcttcttctacattcatcctccaaatggtttctcacacgaccaaacctaagtctcagagtcccaaaagacgtgcaccccttcac |
500179 |
T |
|
| Q |
101 |
aatttcaacatcccattactgaagcagggtactcaacgcaatctcacatattgctccaataccgccattatcaatacgttggtgcttcaaccagccattc |
200 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
500178 |
aatttcaacataccattactgaagtagggtactcaacgcaatctcacatattgctccaataccgccattatcaatacgttggtgcttcaaccagccattc |
500079 |
T |
|
| Q |
201 |
ttcnnnnnnntacatgaaagcaccgat |
227 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
500078 |
ttcaaaaaaatacatgaaagcaccgat |
500052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 23103856 - 23103660
Alignment:
| Q |
1 |
aagcacaaacccctaatcttcttctacattcttcctccaaatggtttctcacaccaccaaaccaaagtctcggagtccaaaaagacgtgccccccttcac |
100 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||||||||| |||||||||||||||| ||| | |||| |||||| ||||||||| | ||| ||||| |
|
|
| T |
23103856 |
aagcaccaaaccctattcttcttctacat----cctccaaatagtttctcacaccaccagacctatgtctttgagtcccaaaagacgtacaccctttcac |
23103761 |
T |
|
| Q |
101 |
aatttcaacatcccattactgaagcagggtactcaacgcaatctcacatattgctccaataccgccattatcaata-cgttggtgcttcaaccagccatt |
199 |
Q |
| |
|
||||||| | ||||||| || | |||| |||||||||||||||| |||| ||| ||| |||||||||||| || ||||||||||||||||| || |
|
|
| T |
23103760 |
aatttcactttaccattaccgacgtggggtgttcaacgcaatctcaca---tgcttcaacaccaccattatcaataccgctggtgcttcaaccagccttt |
23103664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University