View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_179 (Length: 239)
Name: NF20633_high_179
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_179 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 45648372 - 45648150
Alignment:
| Q |
17 |
caccgaaggctcaagactctcaattttggaaaatatgtagcaagaattgaagcaaagaagatgttacatggccccataatcttgagttcactgaagttct |
116 |
Q |
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| T |
45648372 |
caccgaaggctcaagactctcaattttggaaaatatgtagcaagaattgaagcaaagaagatgttacatggccccataatcttgagttcactgaagttct |
45648273 |
T |
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| Q |
117 |
tgcagtttgttgcaatttcatctagaaaatatggcgcgttttctatagtaggcattgtcaaagactccagctctttccaggaacggattgccttgcacat |
216 |
Q |
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| T |
45648272 |
tgcagtttgttgcaatttcatctagaaaatatggcgcgttttctatagtaggcattgtcaaagactccagctctttccaggaacggattgccttgcacat |
45648173 |
T |
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| Q |
217 |
tcctgtacttttaattctgttcc |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
45648172 |
tcctgtacttttaattctgttcc |
45648150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 45643353 - 45643131
Alignment:
| Q |
17 |
caccgaaggctcaagactctcaattttggaaaatatgtagcaagaattgaagcaaagaagatgttacatggccccataatcttgagttcactgaagttct |
116 |
Q |
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|||||||||||||||| |||||||||||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45643353 |
caccgaaggctcaagaatctcaattttggaacaaatgcagcaagagttgaagcaaagaagatgtcacatggccccataatcttgagttcactgaagttct |
45643254 |
T |
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| Q |
117 |
tgcagtttgttgcaatttcatctagaaaatatggcgcgttttctatagtaggcattgtcaaagactccagctctttccaggaacggattgccttgcacat |
216 |
Q |
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||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||| | |||||| |||||||||||| ||||||||||||||||||| |
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| T |
45643253 |
tgcagtttgttgcaatttcctctagaaaatatggcgggtttgctatactaggcattgttagagactctagctctttccagcaacggattgccttgcacat |
45643154 |
T |
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| Q |
217 |
tcctgtacttttaattctgttcc |
239 |
Q |
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|||||| |||||||||||||||| |
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| T |
45643153 |
tcctgttcttttaattctgttcc |
45643131 |
T |
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