View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_181 (Length: 239)
Name: NF20633_high_181
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_181 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 8776208 - 8775988
Alignment:
| Q |
19 |
ttatcgtcatcaacaatcgtcacagaattaaggaattgttcataatcttcatcaacatcaaactgcacttcaggagtatcaaattcctgatcagaaacga |
118 |
Q |
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| T |
8776208 |
ttatcgtcatcaacaatcgtcacagaattaaggaattgttcataatcttcatcaacatcaaactgcacttcaggagtatcaaattcctgatcagaaacga |
8776109 |
T |
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| Q |
119 |
gtgaatttcgcctaacacttgaactttttcctagtaactgatcatcttcatctacaccaacaccatcactaatatgatcagaaacagattgattcggaaa |
218 |
Q |
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| T |
8776108 |
gtgaatttcgcctaacacttgaactttttcctagtaactgatcatcttcatctacaccaacaccatcactaatatgatcagaaacagattgattcggaaa |
8776009 |
T |
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| Q |
219 |
ataactgcaaccttctcctac |
239 |
Q |
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| T |
8776008 |
ataactgcaaccttctcctac |
8775988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 8782045 - 8782010
Alignment:
| Q |
118 |
agtgaatttcgcctaacacttgaactttttcctagt |
153 |
Q |
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| T |
8782045 |
agtgaatttcgcttaacacttgaactttttcctagt |
8782010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 8787653 - 8787617
Alignment:
| Q |
157 |
tgatcatcttcatctacaccaacaccatcactaatat |
193 |
Q |
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| T |
8787653 |
tgatcatcttcatctacaccaacatcatcgctaatat |
8787617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 8787821 - 8787785
Alignment:
| Q |
157 |
tgatcatcttcatctacaccaacaccatcactaatat |
193 |
Q |
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| T |
8787821 |
tgatcaccttcatctacaccaacatcatcactaatat |
8787785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 2541468 - 2541519
Alignment:
| Q |
19 |
ttatcgtcatcaacaatcgtcacagaattaaggaattgttcataatcttcat |
70 |
Q |
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| T |
2541468 |
ttatcgtcatcaacaatagtcacagaattaaggaactgttcataatcttcat |
2541519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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