View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_high_186 (Length: 238)
Name: NF20633_high_186
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_186 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46564788 - 46564567
Alignment:
| Q |
1 |
cttattttttaattattagtgtaaaaaaggatataaaccaaacaaattgcattatgatgatggtgatgatgacaggaacgtacccgaagaaagtgatgag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46564788 |
cttattttttaattattagtgtacaaaaggatataaaccaaacaaattgcattatgatgatggtgatgatgacaggaacgtacccgaagaaagtgatgag |
46564689 |
T |
|
| Q |
101 |
aaataatggccacatgaaatcgtgatattttgttgtggcctgtggggttggcggatttgaaatcaaacaccatttaaaaaatgtttttaaatttgtttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46564688 |
aaataatggccacatgaaatcgtgatattttgttgtggcctgtggggttggcggatttgaaatcaaacaccatttaaaaaatgtttttaaatttgttaca |
46564589 |
T |
|
| Q |
201 |
tggtaatagtattaaagtttat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46564588 |
tggtaatagtattaaagtttat |
46564567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University