View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_high_188 (Length: 238)
Name: NF20633_high_188
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_high_188 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51486854 - 51486636
Alignment:
| Q |
1 |
ctaaaacctataactttaacataagcagtaccatcctccaagacctgactccaacgcatgattgcaatcctaaattagagttgtttgcatattttgaaca |
100 |
Q |
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| T |
51486854 |
ctaaaacccataactttaacataagcagtaccatcctccaagacctgactccaacacatgattgcaatcctaaattagagttgtttgcatattttgaaca |
51486755 |
T |
|
| Q |
101 |
atactagataatacaataaagaaataaaaatacaaaatcaacaagaaacctttatgtctttactagagcgcttttagtgattttcaaagnnnnnnngcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
51486754 |
atactagataatacaataaagaaataaaaatacaaaatcaacaagaaacctttatgtctttactaga--gcttttagtgattttcaaagaaaaatagcaa |
51486657 |
T |
|
| Q |
201 |
ttgaaagtacagattgtctac |
221 |
Q |
| |
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||||||||||| ||||||||| |
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|
| T |
51486656 |
ttgaaagtacaaattgtctac |
51486636 |
T |
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